############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis ### ############################################################################## ############################################################################## * checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK * preparing ‘methylationArrayAnalysis’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown Quitting from methylationArrayAnalysis.Rmd:459-464 [figure10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `httr2::req_perform()`: ! HTTP 504 Gateway Timeout. --- Backtrace: ▆ 1. └─DMRcate::DMR.plot(...) 2. ├─base::suppressWarnings(...) 3. │ └─base::withCallingHandlers(...) 4. └─Gviz::BiomartGeneRegionTrack(...) 5. └─methods::new(...) 6. ├─methods::initialize(value, ...) 7. └─Gviz::initialize(value, ...) 8. └─Gviz (local) .local(.Object, ...) 9. └─Gviz:::.cacheMartData(.Object, chromosome, staged) 10. └─Gviz:::.fetchBMData(bmtrack, chromosome, staged) 11. └─biomaRt::getBM(...) 12. └─biomaRt:::.submitQueryXML(...) 13. └─httr2::req_perform(req) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics: HTTP 504 Gateway Timeout. --- failed re-building ‘methylationArrayAnalysis.Rmd’ SUMMARY: processing the following file failed: ‘methylationArrayAnalysis.Rmd’ Error: Vignette re-building failed. Execution halted