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BUILD BIN report for spliceSites on tokay1

This page was generated on 2019-03-19 15:22:29 -0400 (Tue, 19 Mar 2019).

Package 1493/1649HostnameOS / ArchINSTALLBUILDCHECK
spliceSites 1.30.0
Wolfgang Kaisers
Snapshot Date: 2019-03-18 17:01:12 -0400 (Mon, 18 Mar 2019)
URL: https://git.bioconductor.org/packages/spliceSites
Branch: RELEASE_3_8
Last Commit: faa0748
Last Changed Date: 2018-10-30 11:41:52 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  ERROR  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: spliceSites
Version: 1.30.0
Command: rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceSites.buildbin-libdir spliceSites_1.30.0.tar.gz
StartedAt: 2019-03-19 07:57:52 -0400 (Tue, 19 Mar 2019)
EndedAt: 2019-03-19 07:58:33 -0400 (Tue, 19 Mar 2019)
EllapsedTime: 41.3 seconds
RetCode: 0
Status:  OK  
PackageFile: spliceSites_1.30.0.zip
PackageFileSize: 3.646 MiB

Command output

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### Running command:
###
###   rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceSites.buildbin-libdir spliceSites_1.30.0.tar.gz
###
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install for i386

* installing *source* package 'spliceSites' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c spliceSites.c -o spliceSites.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o spliceSites.dll tmp.def spliceSites.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/spliceSites.buildbin-libdir/spliceSites/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spliceSites'
    finding HTML links ... done
    SpliceCountSet-class                    html  
    aaGapSites-class                        html  
    addGeneAligns                           html  
    addGenomeData-ExpressionSet             html  
    addGenomeData-gapSites                  html  
    addHbond                                html  
    addMaxEnt                               html  
    alt_X_ranks                             html  
    annGapSites-class                       html  
    annotate-ExpressionSet                  html  
    annotation                              html  
    as.data.frame-methods                   html  
    c-methods                               html  
    cRanges-class                           html  
    caRanges-class                          html  
    cdRanges-class                          html  
    countByGeneName                         html  
    dim-methods                             html  
    dnaGapSites-class                       html  
    dnaRanges                               html  
    extractByGeneName                       html  
    extractRange                            html  
    gapSites-class                          html  
    gapSites                                html  
    getGapSites                             html  
    hbond-class                             html  
    head-methods                            html  
    initialize-methods                      html  
    keyProfiler-class                       html  
    lrCodons                                html  
    maxEnt-class                            html  
    merge-methods                           html  
    plotGeneAlignDepth                      html  
    rangeByGeneName                         html  
    readCuffGeneFpkm                        html  
    readExpSet                              html  
    readMergedBamGaps                       html  
    readTabledBamGaps                       html  
    seqlogo                                 html  
    silic_tryp                              html  
    sortTable-methods                       html  
    spliceSites-package                     html  
    trim                                    html  
    truncateSeq                             html  
    truncate_seq                            html  
    trypsinCleave                           html  
    uniqueJuncAnn                           html  
    write.files                             html  
    xCodons                                 html  
    xJunc                                   html  
    xJuncStrand                             html  
    z[-methods                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'spliceSites' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c spliceSites.c -o spliceSites.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o spliceSites.dll tmp.def spliceSites.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/spliceSites.buildbin-libdir/spliceSites/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spliceSites' as spliceSites_1.30.0.zip
* DONE (spliceSites)
In R CMD INSTALL
In R CMD INSTALL