Multiple platform build/check report for BioC 3.8 experimental data

This page was generated on 2019-04-16 15:26:21 -0400 (Tue, 16 Apr 2019).

git log

Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)

Hostname	OS	Arch (*)	Platform label (**)	R version	Installed pkgs
*malbec1*	Linux (Ubuntu 16.04.6 LTS)	x86_64	x86_64-linux-gnu	3.5.3 (2019-03-11) -- "Great Truth"	3393
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X (*) as reported by 'gcc -v'

Hostname

Arch (*)

Platform label (**)

R version

Installed pkgs

malbec1

Linux (Ubuntu 16.04.6 LTS)

x86_64

x86_64-linux-gnu

3.5.3 (2019-03-11) -- "Great Truth"

3393

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X (**) as reported by 'gcc -v'

Package propagation status is indicated by one of the following LEDs
	YES: Package was propagated because it didn't previously exist or version was bumped
	NO: Package was not propagated because of a problem (impossible dependencies, or version lower than what is already propagated)
	UNNEEDED: Package was not propagated because it is already in the repository with this version. A version bump is required in order to propagate it

A ~~crossed-out~~ package name indicates the package is deprecated

SUMMARY

OS / Arch

INSTALL

BUILD

CHECK

BUILD BIN

malbec1

Linux (Ubuntu 16.04.6 LTS) / x86_64

358

356

276

ABAData 1.12.0

Steffi Grote

affycompData 1.20.0

Harris Jaffee

affydata 1.30.0

Harris Jaffee

WARNINGS

Affyhgu133A2Expr 1.18.0

Zhicheng Ji

Affyhgu133aExpr 1.20.0

Zhicheng Ji

Affyhgu133Plus2Expr 1.16.0

Zhicheng Ji

AffymetrixDataTestFiles 0.20.0

Henrik Bengtsson

Affymoe4302Expr 1.20.0

Zhicheng Ji

airway 1.2.0

Michael Love

ALL 1.24.0

Robert Gentleman

allenpvc 1.0.0

Diogo P. P. Branco

ALLMLL 1.22.0

B. M. Bolstad

alpineData 1.8.0

Michael Love

AmpAffyExample 1.22.0

Rafael A. Irizarry

WARNINGS

AneuFinderData 1.10.0

Aaron Taudt

WARNINGS

antiProfilesData 1.18.0

Hector Corrada Bravo

aracne.networks 1.8.0

Federico M. Giorgi , Mariano Alvarez

WARNINGS

ARRmData 1.18.0

Jean-Philippe Fortin

AshkenazimSonChr21 1.12.0

Who to complain to

ASICSdata 1.2.0

Gaëlle Lefort

AssessORFData 1.0.0

Deepank Korandla

bcellViper 1.18.0

Mariano Javier Alvarez

beadarrayExampleData 1.20.0

Mark Dunning

BeadArrayUseCases 1.20.0

Mike Smith

WARNINGS

beta7 1.20.0

Jean Yang

WARNINGS

biotmleData 1.6.0

Nima Hejazi

bladderbatch 1.20.0

Jeffrey T. Leek

WARNINGS

blimaTestingData 1.2.0

Vojtech Kulvait

BloodCancerMultiOmics2017 1.2.0

Malgorzata Oles

brainImageRdata 1.0.0

Sara Linker

breakpointRdata 1.0.0

David Porubsky

breastCancerMAINZ 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

breastCancerNKI 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

breastCancerTRANSBIG 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

breastCancerUNT 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

breastCancerUPP 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

breastCancerVDX 1.20.0

Markus Schroeder , Benjamin Haibe-Kains

WARNINGS

brgedata 1.4.0

Carlos Ruiz-Arenas

WARNINGS

bronchialIL13 1.20.0

Vince Carey

bsseqData 0.20.0

Kasper Daniel Hansen

cancerdata 1.20.0

Daniel Kosztyla

CardinalWorkflows 1.14.0

Kylie A. Bemis

ccdata 1.8.0

Alex Pickering

WARNINGS

CCl4 1.20.0

Audrey Kauffmann

WARNINGS

ccTutorial 1.20.0

Joern Toedling

celarefData 1.0.0

Sarah Williams

CellMapperData 1.8.0

Brad Nelms

ceu1kg 0.20.0

VJ Carey

ceu1kgv 0.24.0

VJ Carey

ceuhm3 0.20.0

VJ Carey

cgdv17 0.20.0

VJ Carey

ChAMPdata 2.14.1

Yuan Tian

charmData 1.18.0

Martin Aryee

WARNINGS

ChIC.data 1.2.0

Carmen Maria Livi

ChimpHumanBrainData 1.20.0

Sean Davis

chipenrich.data 2.6.0

Raymond G. Cavalcante

ChIPexoQualExample 1.6.0

Rene Welch

ChIPXpressData 1.20.0

George Wu

WARNINGS

chromstaRData 1.8.0

Aaron Taudt

CLL 1.22.0

Robert Gentleman

CLLmethylation 1.2.0

Malgorzata Oles , Andreas Mock

cMap2data 1.18.0

J. Saez-Rodriguez

cnvGSAdata 1.18.0

Joseph Lugo

WARNINGS

COHCAPanno 1.18.0

Charles Warden

colonCA 1.24.0

W Sylvia Merk

WARNINGS

CONFESSdata 1.10.0

Diana LOW

ConnectivityMap 1.18.0

Paul Shannon

COPDSexualDimorphism.data 1.18.0

J Fah Sathirapongsasuti

WARNINGS

CopyhelpeR 1.14.0

Oscar Krijgsman

CopyNeutralIMA 1.0.0

Xavier Pastor Hostench

COSMIC.67 1.18.0

Julian Gehring

CRCL18 1.2.0

Claudio Isella

curatedBladderData 1.18.1

Markus Riester

curatedBreastData 2.10.0

Katie Planey

curatedCRCData 2.14.0

Princy Parsana

ERROR

skipped

curatedMetagenomicData 1.12.3

Lucas Schiffer

curatedOvarianData 1.20.1

Levi Waldron

curatedTCGAData 1.4.3

Marcel Ramos

DAPARdata 1.12.1

Samuel Wieczorek

WARNINGS

davidTiling 1.22.0

Wolfgang Huber

WARNINGS

derfinderData 2.0.0

Leonardo Collado-Torres

DeSousa2013 1.18.0

Xin Wang

diffloopdata 1.10.0

Caleb Lareau

diggitdata 1.14.0

Mariano Javier Alvarez

DLBCL 1.22.0

Marcus Dittrich

WARNINGS

DmelSGI 1.14.0

Bernd Fischer

DMRcatedata 1.18.0

Tim Peters

WARNINGS

DonaPLLP2013 1.20.0

Joseph D. Barry

DREAM4 1.18.0

Paul Shannon

WARNINGS

dressCheck 0.20.0

Vincent Carey

DrugVsDiseasedata 1.18.0

J. Saez-Rodriguez

dsQTL 0.20.0

VJ Carey

DuoClustering2018 1.0.0

Angelo Duò

DvDdata 1.18.0

J. Saez-Rodriguez

dyebiasexamples 1.22.0

Philip Lijnzaad

WARNINGS

EatonEtAlChIPseq 0.20.0

Patrick Aboyoun

ecoliLeucine 1.22.0

Laurent Gautier

WARNINGS

EGSEAdata 1.10.0

Monther Alhamdoosh

ELMER.data 2.6.0

Tiago Chedraoui Silva

estrogen 1.28.0

Wolfgang Huber

etec16s 1.10.0

Joseph N. Paulson

faahKO 1.22.0

Colin A. Smith

WARNINGS

fabiaData 1.20.0

Sepp Hochreiter

facopy.annot 1.2.0

David Mosen-Ansorena

facsDorit 1.24.0

Florian Hahne

FANTOM3and4CAGE 1.18.0

Vanja Haberle

ffpeExampleData 1.20.0

Levi Waldron

fibroEset 1.24.0

Sylvia Merk

WARNINGS

FIs 1.10.0

Herbert Braselmann

fission 1.2.0

Michael Love

Fletcher2013a 1.18.0

Mauro Castro

Fletcher2013b 1.18.0

Mauro Castro

flowFitExampleData 1.18.0

Davide Rambaldi

flowPloidyData 1.8.0

Tyler Smith

flowQBData 1.8.0

Josef Spidlen

FlowSorted.Blood.450k 1.20.0

Andrew E Jaffe

FlowSorted.Blood.EPIC 1.0.0

Lucas A. Salas

FlowSorted.CordBlood.450k 1.10.0

Shan V. Andrews

FlowSorted.CordBloodNorway.450k 1.8.0

kristina gervin

FlowSorted.DLPFC.450k 1.18.0

Andrew E Jaffe

flowWorkspaceData 2.18.0

Mike Jiang

frmaExampleData 1.18.0

Matthew N. McCall

WARNINGS

FunciSNP.data 1.18.0

Simon G. Coetzee

furrowSeg 1.10.0

Joseph Barry

WARNINGS

gageData 2.20.0

Weijun Luo

gaschYHS 1.20.0

Vince Carey

gatingMLData 2.22.0

J. Spidlen

gcspikelite 1.20.0

Mark Robinson

WARNINGS

geneLenDataBase 1.18.0

Nadia Davidson , Anthony Hawkins

WARNINGS

genomationData 1.14.0

Vedran Franke

GeuvadisTranscriptExpr 1.10.0

Malgorzata Nowicka

geuvPack 1.14.0

VJ Carey

geuvStore2 1.12.0

VJ Carey

WARNINGS

GGdata 1.20.0

VJ Carey

GIGSEAdata 1.0.0

Shijia Zhu

golubEsets 1.24.0

Vince Carey

grndata 1.14.0

Pau Bellot

GSBenchMark 1.2.0

Bahman Afsari

GSE62944 1.10.0

Bioconductor Package Maintainer

gskb 1.14.0

Valerie Bares

GSVAdata 1.18.0

Robert Castelo

GWASdata 1.20.0

Stephanie Gogarten , Adrienne Stilp

h5vcData 2.2.0

Paul Theodor Pyl

hapmap100khind 1.24.0

Benilton Carvalho

hapmap100kxba 1.24.0

Benilton Carvalho

hapmap500knsp 1.24.0

Benilton Carvalho

hapmap500ksty 1.24.0

Benilton Carvalho

hapmapsnp5 1.24.0

Benilton Carvalho

hapmapsnp6 1.24.0

Benilton Carvalho

harbChIP 1.20.0

VJ Carey

HarmanData 1.10.0

Jason Ross

HarmonizedTCGAData 1.4.0

Tianle Ma

HD2013SGI 1.22.0

Bernd Fischer

HDCytoData 1.2.11

Lukas M. Weber

healthyFlowData 1.20.0

Ariful Azad

HEEBOdata 1.20.0

Agnes Paquet

WARNINGS

HelloRangesData 1.8.0

Michael Lawrence

hgu133abarcodevecs 1.20.0

Matthew N. McCall

hgu133plus2barcodevecs 1.20.0

Matthew N. McCall

hgu133plus2CellScore 1.2.0

Nancy Mah

hgu2beta7 1.22.0

Bioconductor Package Maintainer

WARNINGS

HiCDataHumanIMR90 1.2.0

Nicolas Servant

HiCDataLymphoblast 1.18.0

Borbala Mifsud

Hiiragi2013 1.18.0

Andrzej Oles

HIVcDNAvantWout03 1.22.0

Chris Fraley

WARNINGS

HMP16SData 1.2.1

Lucas Schiffer

hmyriB36 1.18.0

Vincent Carey

HSMMSingleCell 1.2.0

Cole Trapnell

WARNINGS

HumanAffyData 1.8.0

Brad Nelms

humanStemCell 0.22.0

R. Gentleman

WARNINGS

IHWpaper 1.10.0

Nikos Ignatiadis

Illumina450ProbeVariants.db 1.18.0

Tiffany Morris

IlluminaDataTestFiles 1.20.0

Kasper Daniel Hansen

~~iontreeData~~ 1.18.0

Mingshu Cao

WARNINGS

ITALICSData 2.20.0

Guillem Rigaill

WARNINGS

Iyer517 1.24.0

Vince Carey

JASPAR2014 1.18.0

Ge Tan

JASPAR2016 1.10.0

Ge Tan

JctSeqData 1.12.0

Stephen Hartley

KEGGandMetacoreDzPathwaysGEO 1.2.0

Gaurav Bhatti

KEGGdzPathwaysGEO 1.20.0

Gaurav Bhatti

kidpack 1.24.0

Wolfgang Huber

WARNINGS

KOdata 1.8.0

Shana White

leeBamViews 1.18.0

VJ Carey

leukemiasEset 1.18.0

Sara Aibar

LiebermanAidenHiC2009 0.20.0

Felix Klein

WARNINGS

ListerEtAlBSseq 1.14.0

Kamal Kishore

WARNINGS

lumiBarnes 1.22.0

Pan Du

WARNINGS

LungCancerACvsSCCGEO 1.18.0

Adi Laurentiu Tarca

LungCancerLines 0.20.0

Cory Barr

lungExpression 0.20.0

Robert Scharpf

lydata 1.8.0

Alex Pickering

M3DExampleData 1.8.0

Tallulah Andrews

WARNINGS

mammaPrintData 1.18.0

Luigi Marchionni

mAPKLData 1.14.0

Argiris Sakellariou

WARNINGS

maqcExpression4plex 1.26.0

Benilton Carvalho

MAQCsubset 1.20.0

VJ Carey

MAQCsubsetAFX 1.20.0

Laurent Gatto

MAQCsubsetILM 1.20.0

Laurent Gatto

mCSEAdata 1.2.0

Jordi Martorell Marugán

mcsurvdata 1.0.0

Adria Caballe Mestres

MEDIPSData 1.18.0

Lukas Chavez

MEEBOdata 1.20.0

Agnes Paquet

WARNINGS

MetaGxBreast 1.2.0

Michael Zon

MetaGxOvarian 1.2.0

Michael Zon

WARNINGS

MetaGxPancreas 1.2.0

Michael Zon

metaMSdata 1.18.0

Ron Wehrens

MethylAidData 1.14.0

M. van Iterson

methyvimData 1.4.0

Nima Hejazi

microRNAome 1.4.0

Matthew N. McCall

MIGSAdata 1.6.0

Juan C. Rodriguez

minfiData 0.28.0

Kasper Daniel Hansen

minfiDataEPIC 1.8.0

Kasper Daniel Hansen

minionSummaryData 1.12.0

Mike Smith

miRcompData 1.12.0

Matthew N. McCall

miRNATarget 1.20.0

Y-h. Taguchi

mitoODEdata 1.18.0

Gregoire Pau

MMDiffBamSubset 1.18.0

Gabriele Schweikert

mosaicsExample 1.20.0

Dongjun Chung

mouse4302barcodevecs 1.20.0

Matthew N. McCall

~~MSBdata~~ 1.0.0

Wolfgang Huber

WARNINGS

msd16s 1.2.0

Joseph N. Paulson

msdata 0.22.0

Steffen Neumann , Laurent Gatto

MSMB 1.0.2

Wolfgang Huber

WARNINGS

msPurityData 1.10.0

Thomas N. Lawson

msqc1 1.10.0

Christian Panse

MSstatsBioData 1.4.0

Meena Choi

mtbls2 1.12.0

Steffen Neumann

MTseekerData 1.0.0

Tim Triche, Jr.

MUGAExampleData 1.2.0

Daniel Gatti

Mulder2012 0.22.0

Xin Wang

mvoutData 1.18.0

VJ Carey

NCIgraphData 1.18.0

Laurent Jacob

WARNINGS

Neve2006 0.20.0

VJ Carey

NGScopyData 1.2.0

Xiaobei Zhao

OMICsPCAdata 1.0.0

Subhadeep Das

OnassisJavaLibs 1.4.2

Eugenia Galeota

parathyroidSE 1.20.0

Michael Love

pasilla 1.10.0

Alejandro Reyes

pasillaBamSubset 0.20.0

Hervé Pagès

PasillaTranscriptExpr 1.10.0

Malgorzata Nowicka

PathNetData 1.18.0

Jason B. Smith

pathprintGEOData 1.12.0

Sokratis Kariotis

pcaGoPromoter.Hs.hg19 1.18.0

Morten Hansen

pcaGoPromoter.Mm.mm9 1.18.0

Morten Hansen

pcaGoPromoter.Rn.rn4 1.18.0

Morten Hansen,

PCHiCdata 1.10.0

Paula Freire-Pritchett

pcxnData 2.4.0

Sokratis Kariotis

pd.atdschip.tiling 0.20.0

Kristof De Beuf

WARNINGS

pepDat 1.2.0

Renan Sauteraud

PepsNMRData 1.0.0

Manon Martin

PGPC 1.10.0

Felix Klein

ERROR

skipped

plasFIA 1.10.0

Alexis Delabriere

ppiData 0.20.0

Bioconductor Package Maintainer

WARNINGS

prebsdata 1.18.0

Karolis Uziela

PREDAsampledata 0.22.0

Francesco Ferrari

ProData 1.20.0

Xiaochun Li

pRolocdata 1.20.0

Laurent Gatto

prostateCancerCamcap 1.10.0

Mark Dunning

prostateCancerGrasso 1.10.0

Mark Dunning

prostateCancerStockholm 1.10.0

Mark Dunning

prostateCancerTaylor 1.10.0

Mark Dunning

prostateCancerVarambally 1.10.0

Mark Dunning

PtH2O2lipids 1.8.0

James Collins

WARNINGS

pumadata 2.18.0

Richard Pearson

PWMEnrich.Dmelanogaster.background 4.16.0

Robert Stojnic

WARNINGS

PWMEnrich.Hsapiens.background 4.16.0

Robert Stojnic

WARNINGS

PWMEnrich.Mmusculus.background 4.16.0

Robert Stojnic

QDNAseq.hg19 1.12.0

Daoud Sie

QDNAseq.mm10 1.12.0

Daoud Sie

qPLEXdata 1.0.1

Kamal Kishore Developer

WARNINGS

QUBICdata 1.10.0

Yu Zhang

rcellminerData 2.4.0

Augustin Luna , Vinodh Rajapakse

WARNINGS

RcisTarget.hg19.motifDBs.cisbpOnly.500bp 1.2.0

Sara Aibar

RegParallel 1.0.0

Kevin Blighe

ERROR

skipped

restfulSEData 1.4.0

Bioconductor Package Maintainer

RforProteomics 1.20.0

Laurent Gatto

ERROR

skipped

RGMQLlib 1.2.0

Simone Pallotta

rheumaticConditionWOLLBOLD 1.20.0

Alejandro Quiroz-Zarate

RIPSeekerData 1.18.0

Alejandro Reyes

WARNINGS

RITANdata 1.6.0

Michael Zimmermann

RMassBankData 1.20.0

Michael Stravs, Emma Schymanski

RNAinteractMAPK 1.20.0

Bernd Fischer

RNAseqData.HNRNPC.bam.chr14 0.20.0

Hervé Pagès

RNASeqRData 1.0.0

Kuan-Hao Chao

RnaSeqSampleSizeData 1.14.0

Shilin Zhao

RnBeads.hg19 1.14.0

RnBeadsAnnotationCreator

RnBeads.hg38 1.14.0

RnBeadsAnnotationCreator

RnBeads.mm10 1.14.0

RnBeadsAnnotationCreator

RnBeads.mm9 1.14.0

RnBeadsAnnotationCreator

RnBeads.rn5 1.14.0

RnBeadsAnnotationCreator

RRBSdata 1.2.0

Katja Hebestreit

rRDPData 1.2.0

Michael Hahsler

RTCGA.clinical 20151101.12.0

Marcin Kosinski

RTCGA.CNV 1.10.0

Marcin Kosinski

RTCGA.methylation 1.10.0

Marcin Kosinski

RTCGA.miRNASeq 1.10.0

Marcin Kosinski

RTCGA.mRNA 1.10.0

Marcin Kosinski

RTCGA.mutations 20151101.12.0

Marcin Kosinski

RTCGA.PANCAN12 1.10.0

Marcin Kosinski

RTCGA.rnaseq 20151101.12.0

Marcin Kosinski

RTCGA.RPPA 1.10.0

Marcin Kosinski

RUVnormalizeData 1.2.0

Laurent Jacob

sampleClassifierData 1.6.0

Khadija El Amrani

SCLCBam 1.14.0

Oscar Krijgsman

scRNAseq 1.8.0

Davide Risso

seq2pathway.data 1.14.0

Xinan Holly Yang

seqc 1.16.0

Yang Liao and Wei Shi

seqCNA.annot 1.18.0

David Mosen-Ansorena

serumStimulation 1.18.0

Morten Hansen,

sesameData 1.0.0

Wanding Zhou

ERROR

seventyGeneData 1.18.0

Luigi Marchionni

shinyMethylData 1.2.0

Jean-Philippe Fortin

simpIntLists 1.18.0

Kircicegi Korkmaz

WARNINGS

Single.mTEC.Transcriptomes 1.10.0

Alejandro Reyes

WARNINGS

SNAData 1.28.0

Denise Scholtens

SNAGEEdata 1.18.0

David Venet

SNPhoodData 1.12.0

Christian Arnold

SomatiCAData 1.20.0

Mengjie Chen

WARNINGS

SomaticCancerAlterations 1.18.0

Julian Gehring

SpikeIn 1.24.0

Rafael A. Irizarry

WARNINGS

SpikeInSubset 1.22.0

Rafael A. Irizarry

WARNINGS

stemHypoxia 1.18.0

Cristobal Fresno

stjudem 1.22.0

Joern Toedling

SVM2CRMdata 1.14.0

Guidantonio Malagoli Tagliazucchi

WARNINGS

synapterdata 1.20.0

Laurent Gatto

systemPipeRdata 1.10.0

Thomas Girke

TabulaMurisData 1.0.0

Charlotte Soneson

ERROR

TargetScoreData 1.18.0

Yue Li

TargetSearchData 1.20.0

Alvaro Cuadros-Inostroza

TBX20BamSubset 1.18.0

D. Bindreither

TCGAbiolinksGUI.data 1.2.0

Tiago Chedraoui Silva

TCGAcrcmiRNA 1.2.0

Claudio Isella

TCGAcrcmRNA 1.2.0

Claudio Isella

TCGAMethylation450k 1.18.0

Sean Davis

tcgaWGBSData.hg19 1.0.0

Divy Kangeyan

TCGAWorkflowData 1.6.0

Tiago Chedraoui Silva

TENxBrainData 1.2.0

Bioconductor Package Maintainer

WARNINGS

TENxPBMCData 1.0.0

Stephanie Hicks

TimerQuant 1.12.0

Joseph Barry

tinesath1cdf 1.20.0

Tine Casneuf

WARNINGS

tinesath1probe 1.20.0

Tine Casneuf

WARNINGS

tissueTreg 1.2.0

Charles Imbusch

tofsimsData 1.10.0

Lorenz Gerber

topdownrdata 1.4.0

Sebastian Gibb

tweeDEseqCountData 1.20.0

Juan R Gonzalez

tximportData 1.10.0

Michael Love

VariantToolsData 1.6.0

Michael Lawrence

WARNINGS

vulcandata 1.4.0

Federico M. Giorgi

waveTilingData 1.18.0

Kristof De Beuf

WARNINGS

WES.1KG.WUGSC 1.14.0

Yuchao Jiang

XhybCasneuf 1.20.0

Tineke Casneuf

WARNINGS

yeastCC 1.22.0

Sandrine Dudoit

WARNINGS

yeastExpData 0.28.0

R. Gentleman

WARNINGS

yeastGSData 0.20.0

R. Gentleman

WARNINGS

yeastNagalakshmi 1.18.0

Bioconductor Package Maintainer

yeastRNASeq 0.20.0

J. Bullard

WARNINGS

yri1kgv 0.24.0

VJ Carey

yriMulti 0.12.0

VJ Carey

WARNINGS

zebrafishRNASeq 1.2.0

Davide Risso