Back to Workflows build report for BioC 3.8

BUILD WEB VIG report for annotation on malbec1

This page was generated on 2018-05-18 09:51:43 -0400 (Fri, 18 May 2018).

Package 1/21HostnameOS / ArchINSTALLBUILD
annotation 1.3.0
Bioconductor Package Maintainer
Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018)
URL: https://git.bioconductor.org/packages/annotation
Branch: master
Last Commit: 143b3c3
Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: annotation
Version: 1.3.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R")'
StartedAt: 2018-05-18 08:43:42 -0400 (Fri, 18 May 2018)
EndedAt: 2018-05-18 08:49:36 -0400 (Fri, 18 May 2018)
EllapsedTime: 354.5 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R")'
###
##############################################################################
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> rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")


processing file: Annotating_Genomic_Ranges.Rmd

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output file: Annotating_Genomic_Ranges.knit.md

/usr/bin/pandoc +RTS -K512m -RTS Annotating_Genomic_Ranges.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotating_Genomic_Ranges.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: Annotating_Genomic_Ranges.html
> 
> 
> knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R")


processing file: .buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd

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output file: .buildwebvig/annotation/Annotating_Genomic_Ranges.R

[1] ".buildwebvig/annotation/Annotating_Genomic_Ranges.R"
> 
> 
> rmarkdown::render(".buildwebvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")


processing file: Annotation_Resources.Rmd

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output file: Annotation_Resources.knit.md

/usr/bin/pandoc +RTS -K512m -RTS Annotation_Resources.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotation_Resources.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: Annotation_Resources.html
> 
> 
> knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R")


processing file: .buildwebvig/annotation/Annotation_Resources.Rmd

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output file: .buildwebvig/annotation/Annotation_Resources.R

[1] ".buildwebvig/annotation/Annotation_Resources.R"
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