Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:43 -0400 (Fri, 18 May 2018).
Package 1/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
annotation 1.3.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK |
Package: annotation |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R")' |
StartedAt: 2018-05-18 08:43:42 -0400 (Fri, 18 May 2018) |
EndedAt: 2018-05-18 08:49:36 -0400 (Fri, 18 May 2018) |
EllapsedTime: 354.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment") processing file: Annotating_Genomic_Ranges.Rmd | | | 0% | |.. | 2% ordinary text without R code | |... | 4% label: unnamed-chunk-1 (with options) List of 3 $ echo : logi FALSE $ results: chr "hide" $ warning: logi FALSE | |..... | 7% inline R code fragments | |...... | 9% label: unnamed-chunk-2 (with options) List of 1 $ echo: logi FALSE | |........ | 11% ordinary text without R code | |......... | 13% label: unnamed-chunk-3 | |........... | 15% ordinary text without R code | |............ | 17% label: unnamed-chunk-4 | |.............. | 20% ordinary text without R code | |............... | 22% label: unnamed-chunk-5 | |................. | 24% ordinary text without R code | |.................. | 26% label: unnamed-chunk-6 | |.................... | 28% ordinary text without R code | 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|........................................................... | 85% label: unnamed-chunk-20 | |............................................................. | 87% ordinary text without R code | |.............................................................. | 89% label: unnamed-chunk-21 | |................................................................ | 91% ordinary text without R code | |................................................................. | 93% label: unnamed-chunk-22 | |................................................................... | 96% ordinary text without R code | |.................................................................... | 98% label: sess | |......................................................................| 100% ordinary text without R code output file: Annotating_Genomic_Ranges.knit.md /usr/bin/pandoc +RTS -K512m -RTS Annotating_Genomic_Ranges.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotating_Genomic_Ranges.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: Annotating_Genomic_Ranges.html > > > knitr::purl(".buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildwebvig/annotation/Annotating_Genomic_Ranges.R") processing file: .buildwebvig/annotation/Annotating_Genomic_Ranges.Rmd | | | 0% | |. | 2% | |... | 4% | |.... | 7% | |...... | 9% | |....... | 11% | |........ | 13% | |.......... | 15% | |........... | 17% | |............. | 20% | |.............. | 22% | |................ | 24% | |................. | 26% | |.................. | 28% | |.................... 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file: Annotation_Resources.Rmd | | | 0% | | | 1% ordinary text without R code | |. | 1% label: unnamed-chunk-1 (with options) List of 3 $ echo : logi FALSE $ results: chr "hide" $ warning: logi FALSE | |. | 2% inline R code fragments | |.. | 3% label: unnamed-chunk-2 (with options) List of 1 $ eval: logi FALSE ordinary text without R code | |... | 4% label: unnamed-chunk-3 (with options) List of 1 $ echo: logi FALSE | |... | 5% ordinary text without R code | |.... | 6% label: unnamed-chunk-4 (with options) List of 1 $ eval: logi FALSE ordinary text without R code | |..... | 7% label: unnamed-chunk-5 | |..... | 8% ordinary text without R code | |...... | 8% label: unnamed-chunk-6 | |...... | 9% ordinary text without R code | |....... | 10% label: unnamed-chunk-7 ordinary text without R code | |........ | 11% label: unnamed-chunk-8 | |........ | 12% ordinary text without R code | |......... | 13% label: unnamed-chunk-9 ordinary text without R code | |.......... | 14% label: 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-K512m -RTS Annotation_Resources.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotation_Resources.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: Annotation_Resources.html > > > knitr::purl(".buildwebvig/annotation/Annotation_Resources.Rmd", ".buildwebvig/annotation/Annotation_Resources.R") processing file: .buildwebvig/annotation/Annotation_Resources.Rmd | | | 0% | | | 1% | |. | 1% | |. | 2% | |.. | 3% | |... | 4% | |... | 5% | |.... | 6% | |..... | 7% | |..... | 8% | |...... | 9% | |...... | 10% | |....... | 10% | |....... | 11% | |........ | 12% | |........ | 13% | |......... | 13% | |......... | 14% 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".buildwebvig/annotation/Annotation_Resources.R" > >