Bioconductor Package Maintainer
| Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018) |
| URL: https://git.bioconductor.org/packages/liftOver |
| Branch: master |
| Last Commit: 3536b70 |
| Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018) |
| Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:45 -0400 (Fri, 18 May 2018).
| Package 11/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
| liftOver 1.3.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | |
| Package: liftOver |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/liftOver/liftov.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/liftOver/liftov.Rmd", ".buildwebvig/liftOver/liftov.R")' |
| StartedAt: 2018-05-18 08:44:09 -0400 (Fri, 18 May 2018) |
| EndedAt: 2018-05-18 08:44:38 -0400 (Fri, 18 May 2018) |
| EllapsedTime: 29.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/liftOver/liftov.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/liftOver/liftov.Rmd", ".buildwebvig/liftOver/liftov.R")'
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> rmarkdown::render(".buildwebvig/liftOver/liftov.Rmd", output_format="BiocStyle:::html_fragment")
processing file: liftov.Rmd
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ordinary text without R code
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label: unnamed-chunk-1 (with options)
List of 3
$ echo : logi FALSE
$ results: chr "hide"
$ warning: logi FALSE
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inline R code fragments
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label: doit (with options)
List of 2
$ echo : logi FALSE
$ results: chr "hide"
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label: lkOne (with options)
List of 1
$ eval: logi FALSE
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output file: liftov.knit.md
/usr/bin/pandoc +RTS -K512m -RTS liftov.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output liftov.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
Output created: liftov.html
Warning message:
In .Internal(assign(x, value, envir, inherits)) :
closing unused connection 5 (/home/biocbuild/bbs-3.8-bioc/R/library/liftOver/extdata/hg38ToHg19.over.chain)
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> knitr::purl(".buildwebvig/liftOver/liftov.Rmd", ".buildwebvig/liftOver/liftov.R")
processing file: .buildwebvig/liftOver/liftov.Rmd
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output file: .buildwebvig/liftOver/liftov.R
[1] ".buildwebvig/liftOver/liftov.R"
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