Back to Workflows build report for BioC 3.8 |
This page was generated on 2018-05-18 09:51:47 -0400 (Fri, 18 May 2018).
Package 18/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
sequencing 1.3.0 Martin Morgan
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK |
Package: sequencing |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R")' |
StartedAt: 2018-05-18 08:52:24 -0400 (Fri, 18 May 2018) |
EndedAt: 2018-05-18 08:52:58 -0400 (Fri, 18 May 2018) |
EllapsedTime: 34.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment") processing file: sequencing.Rmd | | | 0% | |.. | 3% ordinary text without R code | |..... | 6% label: style (with options) List of 4 $ echo : logi FALSE $ message: logi FALSE $ warning: logi FALSE $ results: chr "asis" | |....... | 10% ordinary text without R code | |......... | 13% label: unnamed-chunk-1 (with options) List of 3 $ echo : logi FALSE $ results: chr "hide" $ warning: logi FALSE snapshotDate(): 2018-05-18 | |........... | 16% inline R code fragments | |.............. | 19% label: unnamed-chunk-2 (with options) List of 1 $ eval: logi FALSE | |................ | 23% inline R code fragments | |.................. | 26% label: unnamed-chunk-3 (with options) List of 1 $ message: logi FALSE | |.................... | 29% inline R code fragments | |....................... | 32% label: unnamed-chunk-4 (with options) List of 1 $ eval: logi FALSE | |......................... | 35% ordinary text without R code | |........................... | 39% label: unnamed-chunk-5 downloading 0 resources loading from cache '/home/biocbuild//.AnnotationHub/22617' '/home/biocbuild//.AnnotationHub/25666' | |............................. | 42% inline R code fragments | |................................ | 45% label: unnamed-chunk-6 | |.................................. | 48% inline R code fragments | |.................................... | 52% label: unnamed-chunk-7 | |...................................... | 55% ordinary text without R code | |......................................... | 58% label: unnamed-chunk-8 | |........................................... | 61% inline R code fragments | |............................................. | 65% label: unnamed-chunk-9 | |............................................... | 68% inline R code fragments | |.................................................. | 71% label: unnamed-chunk-10 (with options) List of 1 $ eval: logi FALSE | |.................................................... | 74% inline R code fragments | |...................................................... | 77% label: unnamed-chunk-11 | |........................................................ | 81% inline R code fragments | |........................................................... | 84% label: unnamed-chunk-12 | |............................................................. | 87% inline R code fragments | |............................................................... | 90% label: unnamed-chunk-13 | |................................................................. | 94% inline R code fragments | |.................................................................... | 97% label: unnamed-chunk-14 | |......................................................................| 100% ordinary text without R code output file: sequencing.knit.md /usr/bin/pandoc +RTS -K512m -RTS sequencing.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output sequencing.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: sequencing.html > > > knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R") processing file: .buildwebvig/sequencing/sequencing.Rmd | | | 0% | |.. | 3% | |.... | 6% | |...... | 10% | |........ | 13% | |.......... | 16% | |............. | 19% | |............... | 23% | |................. | 26% | |................... | 29% | |..................... | 32% | |....................... | 35% | |......................... | 39% | |........................... | 42% | |............................. | 45% | |............................... | 48% | |.................................. | 52% | |.................................... | 55% | |...................................... | 58% | |........................................ | 61% | |.......................................... | 65% | |............................................ | 68% | |.............................................. | 71% | |................................................ | 74% | |.................................................. | 77% | |.................................................... | 81% | |....................................................... | 84% | |......................................................... | 87% | |........................................................... | 90% | |............................................................. | 94% | |............................................................... | 97% | |.................................................................| 100% output file: .buildwebvig/sequencing/sequencing.R [1] ".buildwebvig/sequencing/sequencing.R" > >