############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CellBarcode ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘CellBarcode’ ... ** this is package ‘CellBarcode’ version ‘1.13.2’ ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ rm -Rf CellBarcode.so ./rust/target/release/libCellBarcode.a entrypoint.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o # In some environments, ~/.cargo/bin might not be included in PATH, so we need # to set it here to ensure cargo can be invoked. It is appended to PATH and # therefore is only used if cargo is absent from the user's PATH. if [ "" != "true" ]; then \ export CARGO_HOME=/Users/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo; \ fi && \ export PATH="/Users/biocbuild/.cargo/bin:/Applications/CMake.app/Contents/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/share/dotnet:/opt/salt:/opt/X11/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/opt/meme/bin:/opt/meme/libexec/meme-5.5.5:/Users/biocbuild/.cargo/bin" && \ cargo build --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Updating crates.io index Downloading crates ... Downloaded cfg-if v1.0.0 Downloaded crc32fast v1.4.2 Downloaded leven-distance v1.0.0 Downloaded paste v1.0.15 Downloaded once_cell v1.20.3 Downloaded quote v1.0.38 Downloaded unicode-ident v1.0.17 Downloaded proc-macro2 v1.0.93 Downloaded memchr v2.7.4 Downloaded miniz_oxide v0.8.5 Downloaded itertools v0.10.5 Downloaded flate2 v1.1.0 Downloaded extendr-api v0.7.1 Downloaded aho-corasick v1.1.3 Downloaded lazy_static v1.5.0 Downloaded adler2 v2.0.0 Downloaded regex v1.11.1 Downloaded extendr-macros v0.7.1 Downloaded syn v2.0.98 Downloaded either v1.14.0 Downloaded regex-syntax v0.8.5 Downloaded regex-automata v0.4.9 Downloaded libR-sys v0.7.1 Compiling proc-macro2 v1.0.93 Compiling unicode-ident v1.0.17 Compiling libR-sys v0.7.1 Compiling paste v1.0.15 Compiling memchr v2.7.4 Compiling extendr-api v0.7.1 Compiling cfg-if v1.0.0 Compiling adler2 v2.0.0 Compiling regex-syntax v0.8.5 Compiling once_cell v1.20.3 Compiling either v1.14.0 Compiling lazy_static v1.5.0 Compiling leven-distance v1.0.0 Compiling crc32fast v1.4.2 Compiling miniz_oxide v0.8.5 Compiling itertools v0.10.5 Compiling aho-corasick v1.1.3 Compiling flate2 v1.1.0 Compiling quote v1.0.38 Compiling syn v2.0.98 Compiling regex-automata v0.4.9 Compiling regex v1.11.1 Compiling extendr-macros v0.7.1 Compiling CellBarcode v0.1.0 (/Users/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/rust) warning: crate `CellBarcode` should have a snake case name | = help: convert the identifier to snake case: `cell_barcode` = note: `#[warn(non_snake_case)]` on by default warning: `CellBarcode` (lib) generated 1 warning Finished `release` profile [optimized] target(s) in 58.84s if [ "" != "true" ]; then \ rm -Rf /Users/biocbuild/bbs-3.21-bioc/meat/CellBarcode/src/.cargo && \ rm -Rf ./rust/target/release/build; \ fi clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o CellBarcode.so entrypoint.o -L./rust/target/release -lCellBarcode -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-CellBarcode/00new/CellBarcode/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CellBarcode)