############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML ### ############################################################################## ############################################################################## * checking for file ‘CytoML/DESCRIPTION’ ... OK * preparing ‘CytoML’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HowToExportGatingSet.Rmd’ using rmarkdown --- finished re-building ‘HowToExportGatingSet.Rmd’ --- re-building ‘cytobank2GatingSet.Rmd’ using rmarkdown --- finished re-building ‘cytobank2GatingSet.Rmd’ --- re-building ‘flowjo_to_gatingset.Rmd’ using rmarkdown Quitting from flowjo_to_gatingset.Rmd:114-117 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `buildEdgeList()`: ! no slot of name "name" for this object of class "pEdge" --- Backtrace: ▆ 1. ├─base::plot(gs) 2. └─flowWorkspace::plot(gs) 3. └─flowWorkspace:::.layoutGraph(g, ...) 4. └─Rgraphviz::layoutGraph(...) 5. └─Rgraphviz (local) layoutFun(x, ...) 6. └─Rgraphviz::agopen(...) 7. └─Rgraphviz::buildEdgeList(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'flowjo_to_gatingset.Rmd' failed with diagnostics: no slot of name "name" for this object of class "pEdge" --- failed re-building ‘flowjo_to_gatingset.Rmd’ SUMMARY: processing the following file failed: ‘flowjo_to_gatingset.Rmd’ Error: Vignette re-building failed. Execution halted