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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeepPINCS
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* checking for file ‘DeepPINCS/DESCRIPTION’ ... OK
* preparing ‘DeepPINCS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeepPINCS.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(

Quitting from DeepPINCS.Rmd:81-108 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_call_impl()`:
! ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)`  For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`.
Run `reticulate::py_last_error()` for details.
---
Backtrace:
     ▆
  1. ├─DeepPINCS::fit_cpi(...)
  2. │ ├─base::do.call(net_args$compound, net_args$compound_args)
  3. │ └─DeepPINCS::gcn_in_out(...)
  4. │   └─x %>% layer_multi_linear(units = temp_units) %>% ...
  5. ├─keras::layer_activation(., activation = gcn_activation[i])
  6. │ └─keras::create_layer(...)
  7. └─keras (local) layer_multi_linear(., units = temp_units)
  8.   └─keras::create_layer(Layer, object, args)
  9.     ├─keras:::compose_layer(object, layer)
 10.     └─keras:::compose_layer.default(object, layer)
 11.       └─reticulate (local) layer(object, ...)
 12.         └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DeepPINCS.Rmd' failed with diagnostics:
ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)`  For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`.
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘DeepPINCS.Rmd’

SUMMARY: processing the following file failed:
  ‘DeepPINCS.Rmd’

Error: Vignette re-building failed.
Execution halted