############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Harshlight ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘Harshlight’ ... ** this is package ‘Harshlight’ version ‘1.79.0’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Harshlight.c -o Harshlight.o Harshlight.c: In function ‘report_overall_header’: Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1471 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); | ^ Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1474 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); | ^ Harshlight.c: In function ‘chip_summary’: Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1532 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); | ^ Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1542 | PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); | ^ Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1543 | PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); | ^ Harshlight.c: In function ‘extended_stop’: Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1555 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); | ^ gcc -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-Harshlight/00new/Harshlight/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harshlight)