############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r HiCDOC -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HiCDOC ### ############################################################################## ############################################################################## * checking for file 'HiCDOC/DESCRIPTION' ... OK * preparing 'HiCDOC': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package 'HiCDOC' ... ** this is package 'HiCDOC' version '1.9.2' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.3.0' using C++11 g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c constrainedClustering.cpp -o constrainedClustering.o g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c parseHiCFile.cpp -o parseHiCFile.o g++ -shared -s -static-libgcc -o HiCDOC.dll tmp.def RcppExports.o constrainedClustering.o parseHiCFile.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: parseHiCFile.o:parseHiCFile.c:(.text+0xaaf): undefined reference to `inflateInit_' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: parseHiCFile.o:parseHiCFile.c:(.text+0xab9): undefined reference to `inflate' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: parseHiCFile.o:parseHiCFile.c:(.text+0xac1): undefined reference to `inflateEnd' collect2.exe: error: ld returned 1 exit status no DLL was created ERROR: compilation failed for package 'HiCDOC' * removing 'E:/biocbuild/bbs-3.21-bioc/tmpdir/RtmpWA5ALv/Rinst1adc0810475a/HiCDOC' ----------------------------------- ERROR: package installation failed