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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:OGRE.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings OGRE_1.11.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/OGRE.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘OGRE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OGRE’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OGRE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘OGRE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gvizPlot
> ### Title: Generate Gviz plot
> ### Aliases: gvizPlot
> 
> ### ** Examples
> 
> myOGRE <- makeExampleOGREDataSet()
Initializing OGREDataSet... 
> myOGRE <- loadAnnotations(myOGRE)
Reading query dataset... 
Reading subject datasets... 
> myOGRE <- fOverlaps(myOGRE)
> myOGRE <- gvizPlot(myOGRE,query="ENSG00000142168")
Plotting query: ENSG00000142168
Warning in getMethods(coerce, table = TRUE) :
  'getMethods' is deprecated.
Use 'getMethodsForDispatch(f, TRUE)' instead.
See help("Deprecated")
Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
Calls: gvizPlot ... browserSession -> new -> initialize -> initialize -> .local
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
addDataSetFromHub 21.451  1.096  23.449
covPlot           10.225  0.445   8.356
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   13.             │ ├─BiocGenerics::eval(expression, envir = callEnv)
   14.             │ └─base::eval(expression, envir = callEnv)
   15.             │   └─base::eval(expression, envir = callEnv)
   16.             ├─rtracklayer::browserSession()
   17.             └─rtracklayer::browserSession()
   18.               ├─rtracklayer::browserSession("UCSC", ...)
   19.               └─rtracklayer::browserSession("UCSC", ...)
   20.                 └─methods::new(class, ...)
   21.                   ├─methods::initialize(value, ...)
   22.                   └─rtracklayer::initialize(value, ...)
   23.                     └─rtracklayer (local) .local(.Object, ...)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 8 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/OGRE.Rcheck/00check.log’
for details.