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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ORFik
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* checking for file ‘ORFik/DESCRIPTION’ ... OK
* preparing ‘ORFik’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotation_Alignment.Rmd’ using rmarkdown
--- finished re-building ‘Annotation_Alignment.Rmd’

--- re-building ‘Importing_Data.Rmd’ using rmarkdown

Quitting from Importing_Data.Rmd:164-177 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file.exists()`:
! invalid 'file' argument
---
Backtrace:
    ▆
 1. └─ORFik::getGenomeAndAnnotation(...)
 2.   └─ORFik:::get_genome_gtf(...)
 3.     ├─R.utils::gunzip(gtf, overwrite = TRUE)
 4.     └─R.utils::gunzip.default(gtf, overwrite = TRUE)
 5.       ├─R.utils::decompressFile(...)
 6.       └─R.utils::decompressFile.default(...)
 7.         └─base::file.exists(filename)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Importing_Data.Rmd' failed with diagnostics:
invalid 'file' argument
--- failed re-building ‘Importing_Data.Rmd’

--- re-building ‘ORFikExperiment.Rmd’ using rmarkdown
--- finished re-building ‘ORFikExperiment.Rmd’

--- re-building ‘ORFikOverview.Rmd’ using rmarkdown
--- finished re-building ‘ORFikOverview.Rmd’

--- re-building ‘Ribo-seq_pipeline.Rmd’ using rmarkdown
--- finished re-building ‘Ribo-seq_pipeline.Rmd’

--- re-building ‘Working_with_transcripts.Rmd’ using rmarkdown
--- finished re-building ‘Working_with_transcripts.Rmd’

SUMMARY: processing the following file failed:
  ‘Importing_Data.Rmd’

Error: Vignette re-building failed.
Execution halted