############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r OncoSimulR -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OncoSimulR ### ############################################################################## ############################################################################## * checking for file 'OncoSimulR/DESCRIPTION' ... OK * preparing 'OncoSimulR': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'OncoSimulR.Rmd' using rmarkdown Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from OncoSimulR.Rmd:1289-1292 [figfpancr1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `buildEdgeList()`: ! no slot of name "name" for this object of class "pEdge" --- Backtrace: ▆ 1. ├─base::plot(pancr) 2. ├─base::plot(pancr) 3. └─OncoSimulR:::plot.fitnessEffects(pancr) 4. ├─base::plot(...) 5. └─Rgraphviz::plot(...) 6. └─Rgraphviz (local) .local(x, y, ...) 7. └─Rgraphviz::agopen(...) 8. └─Rgraphviz::buildEdgeList(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'OncoSimulR.Rmd' failed with diagnostics: no slot of name "name" for this object of class "pEdge" --- failed re-building 'OncoSimulR.Rmd' SUMMARY: processing the following file failed: 'OncoSimulR.Rmd' Error: Vignette re-building failed. Execution halted