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### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL cn.farms
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'cn.farms' ...
** this is package 'cn.farms' version '1.55.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c R_init_cnfarms.c -o R_init_cnfarms.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c laplace.cpp -o laplace.o
laplace.cpp: In function 'SEXPREC* momentsGauss(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
laplace.cpp:442:13: warning: unused variable 'method' [-Wunused-variable]
  442 |         int method=0;
      |             ^~~~~~
laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)':
laplace.cpp:364:42: warning: 'I1left' may be used uninitialized [-Wmaybe-uninitialized]
  364 |         double I2left=(-leftMy/leftSigma)*I1left+I0left;
      |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
laplace.cpp:198:16: note: 'I1left' was declared here
  198 |         double I1left;
      |                ^~~~~~
laplace.cpp:368:63: warning: 'I1right' may be used uninitialized [-Wmaybe-uninitialized]
  368 |         double rightMoment1=1.0*rightMy*I0right+1.0*rightSigma*I1right;
      |                                                 ~~~~~~~~~~~~~~^~~~~~~~
laplace.cpp:199:16: note: 'I1right' was declared here
  199 |         double I1right;
      |                ^~~~~~~
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c sparse_farms.c -o sparse_farms.o
sparse_farms.c: In function 'normData':
sparse_farms.c:185:20: error: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
  185 |         void** ret=Calloc(1, void*);
      |                    ^~~~~~
      |                    calloc
sparse_farms.c:185:30: error: expected expression before 'void'
  185 |         void** ret=Calloc(1, void*);
      |                              ^~~~
sparse_farms.c:189:39: error: expected expression before 'double'
  189 |         E_SX_n  =(double**)Calloc(nn, double*);
      |                                       ^~~~~~
sparse_farms.c:198:29: error: expected expression before 'int'
  198 |         nna=(int*)Calloc(1, int);
      |                             ^~~
sparse_farms.c:204:46: error: expected expression before 'double'
  204 |                 E_SX_n[l]=(double*)Calloc(3, double);
      |                                              ^~~~~~
sparse_farms.c: In function 'sparseFarmsC':
sparse_farms.c:264:30: error: expected expression before 'void'
  264 |         void** ret=Calloc(4, void*);
      |                              ^~~~
sparse_farms.c:272:29: error: expected expression before 'int'
  272 |         nna=(int*)Calloc(1, int);
      |                             ^~~
sparse_farms.c:277:31: error: expected expression before 'double'
  277 |         L=(double**)Calloc(2, double*);
      |                               ^~~~~~
sparse_farms.c:279:36: error: expected expression before 'double'
  279 |         lapla=(double**)Calloc(nn, double*);
      |                                    ^~~~~~
sparse_farms.c:281:39: error: expected expression before 'double'
  281 |         E_SX_n  =(double**)Calloc(nn, double*);
      |                                       ^~~~~~
sparse_farms.c:287:41: error: expected expression before 'double'
  287 |                 L[l]=(double*)Calloc(3, double);
      |                                         ^~~~~~
sparse_farms.c:295:45: error: expected expression before 'double'
  295 |                 lapla[l]=(double*)Calloc(3, double);
      |                                             ^~~~~~
sparse_farms.c:297:46: error: expected expression before 'double'
  297 |                 E_SX_n[l]=(double*)Calloc(3, double);
      |                                              ^~~~~~
sparse_farms.c: In function 'deinit':
sparse_farms.c:642:17: error: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration]
  642 |                 Free(L[l]);
      |                 ^~~~
      |                 free
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: sparse_farms.o] Error 1
ERROR: compilation failed for package 'cn.farms'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/cn.farms'