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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:ginmappeR.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings ginmappeR_1.3.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/ginmappeR.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ginmappeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ginmappeR’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ginmappeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Warning: program compiled against libxml 212 using older 211
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
getCARD2KEGG                  8.756  0.343  84.185
getKEGG2NCBIProtein           5.691  0.432 174.513
getCARD2NCBIGene              2.688  0.118  21.636
getCARD2UniProt               2.505  0.122  55.305
getNCBINucleotide2KEGG        1.133  0.076  62.095
getNCBIProtein2UniProt        0.453  0.028  20.593
getKEGG2NCBINucleotide        0.456  0.020  15.785
getNCBIGene2UniProt           0.395  0.016  11.786
getNCBINucleotide2UniProt     0.378  0.032  11.734
getNCBIProtein2CARD           0.347  0.031  26.199
getNCBIProtein2KEGG           0.344  0.025  29.601
getNCBIProtein2NCBIGene       0.324  0.032  16.981
getNCBIProtein2NCBINucleotide 0.317  0.028  15.419
getUniProt2NCBINucleotide     0.217  0.000   7.353
getNCBIGene2CARD              0.158  0.003   8.452
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/ginmappeR.Rcheck/00check.log’
for details.