############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data oligo ### ############################################################################## ############################################################################## * checking for file ‘oligo/DESCRIPTION’ ... OK * preparing ‘oligo’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘oligo’ ... ** this is package ‘oligo’ version ‘1.71.0’ ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DABG.c -o DABG.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ParserGzXYS.c -o ParserGzXYS.o ParserGzXYS.c:62:11: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration] final = Calloc(strlen(result)+1, char); ^ ParserGzXYS.c:62:36: error: expected expression final = Calloc(strlen(result)+1, char); ^ ParserGzXYS.c:147:2: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration] Free(d0); ^ ParserGzXYS.c:147:2: note: did you mean 'free'? /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here void free(void *); ^ ParserGzXYS.c:153:7: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration] Free(d1); // Missed: 12/02/09 ^ ParserGzXYS.c:155:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration] Free(d0); ^ 5 errors generated. make: *** [ParserGzXYS.o] Error 1 ERROR: compilation failed for package ‘oligo’ * removing ‘/private/tmp/RtmpE1g2N8/Rinst153ec3ca73041/oligo’ ----------------------------------- ERROR: package installation failed