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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scGraphVerse
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* checking for file ‘scGraphVerse/DESCRIPTION’ ... OK
* preparing ‘scGraphVerse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘case_study.Rmd’ using rmarkdown

Quitting from case_study.Rmd:214-224 [comparecommunity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `community_path()`:
! Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
---
Backtrace:
    ▆
 1. └─scGraphVerse::community_path(consensus)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'case_study.Rmd' failed with diagnostics:
Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
--- failed re-building ‘case_study.Rmd’

--- re-building ‘simulation_study.Rmd’ using rmarkdown

Quitting from simulation_study.Rmd:312-316 [communities-gtruth]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `community_path()`:
! Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
---
Backtrace:
    ▆
 1. └─scGraphVerse::community_path(adj_truth)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'simulation_study.Rmd' failed with diagnostics:
Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
--- failed re-building ‘simulation_study.Rmd’

SUMMARY: processing the following files failed:
  ‘case_study.Rmd’ ‘simulation_study.Rmd’

Error: Vignette re-building failed.
Execution halted