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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sesame.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sesame_1.25.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/sesame.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 37.073  1.402  38.709
inferSex                      25.777  1.165  27.070
sesameQC_calcStats            24.451  1.947  26.538
sesameQC_plotHeatSNPs         23.958  1.846  26.016
imputeBetas                   20.211  1.422  21.755
ELBAR                         18.128  2.882  21.210
inferSpecies                  16.161  0.672  16.913
diffRefSet                    15.238  0.653  15.987
sesameQC_plotBar              14.077  0.545  14.740
compareMouseStrainReference   13.869  0.419  14.406
sesameQC_plotBetaByDesign     12.266  1.672  14.093
getRefSet                     13.260  0.521  13.868
matchDesign                   11.530  0.720  12.339
compareReference              11.768  0.465  12.315
DML                            9.615  1.291  11.027
visualizeGene                  9.555  0.668  10.326
sdf_read_table                 9.293  0.432   9.804
inferTissue                    7.874  1.411   9.337
inferStrain                    8.550  0.634   9.230
DMR                            8.455  0.298   8.825
dyeBiasCorrMostBalanced        7.286  0.295   7.632
estimateLeukocyte              7.074  0.501   7.624
deidentify                     7.022  0.381   7.475
getMask                        6.742  0.613   7.408
createUCSCtrack                6.254  0.362   6.683
dyeBiasNL                      6.078  0.470   6.597
openSesame                     5.562  0.854   6.480
probeSuccessRate               5.721  0.453   6.216
reIdentify                     4.983  0.313   5.340
scrubSoft                      4.421  0.663   5.115
bisConversionControl           4.688  0.266   5.017
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK