############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data struct ### ############################################################################## ############################################################################## * checking for file ‘struct/DESCRIPTION’ ... OK * preparing ‘struct’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘struct_templates_and_helper_functions.Rmd’ using rmarkdown 2025-12-16 17:48:07.437 R[83750:420100746] XType: Using static font registry. Quitting from struct_templates_and_helper_functions.Rmd:670-682 [unnamed-chunk-27] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'Ontology' is not an exported object from 'namespace:rols' --- Backtrace: ▆ 1. ├─struct::ontology(P) 2. └─struct::ontology(P) 3. └─struct::ontology_list(ont) 4. ├─BiocGenerics::lapply(...) 5. └─base::lapply(...) 6. └─struct (local) FUN(X[[i]], ...) 7. └─struct::ontology_term(id = x) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'struct_templates_and_helper_functions.Rmd' failed with diagnostics: 'Ontology' is not an exported object from 'namespace:rols' --- failed re-building ‘struct_templates_and_helper_functions.Rmd’ SUMMARY: processing the following file failed: ‘struct_templates_and_helper_functions.Rmd’ Error: Vignette re-building failed. Execution halted