############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data twilight ### ############################################################################## ############################################################################## * checking for file ‘twilight/DESCRIPTION’ ... OK * preparing ‘twilight’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘twilight’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c confidence.line.c -o confidence.line.o confidence.line.c: In function ‘unpairedci’: confidence.line.c:21:7: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 21 | ex1=Calloc(*ngene,double); | ^~~~~~ | calloc confidence.line.c:21:21: error: expected expression before ‘double’ 21 | ex1=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:22:21: error: expected expression before ‘double’ 22 | ex0=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:23:22: error: expected expression before ‘double’ 23 | ex21=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:24:22: error: expected expression before ‘double’ 24 | ex20=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:25:19: error: expected expression before ‘double’ 25 | r=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:26:19: error: expected expression before ‘double’ 26 | s=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:27:22: error: expected expression before ‘double’ 27 | stat=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:100:3: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 100 | Free(ex1); | ^~~~ | free confidence.line.c: In function ‘pairedci’: confidence.line.c:118:17: error: expected expression before ‘double’ 118 | g1=Calloc(*n1,double); | ^~~~~~ confidence.line.c:119:17: error: expected expression before ‘double’ 119 | g0=Calloc(*n1,double); | ^~~~~~ confidence.line.c:120:19: error: expected expression before ‘double’ 120 | diff=Calloc(*n1,double); | ^~~~~~ confidence.line.c:121:19: error: expected expression before ‘double’ 121 | r=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:122:19: error: expected expression before ‘double’ 122 | s=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:123:21: error: expected expression before ‘double’ 123 | ex2=Calloc(*ngene,double); | ^~~~~~ confidence.line.c:124:22: error: expected expression before ‘double’ 124 | stat=Calloc(*ngene,double); | ^~~~~~ make: *** [/home/biocbuild/R/R/etc/Makeconf:195: confidence.line.o] Error 1 ERROR: compilation failed for package ‘twilight’ * removing ‘/home/biocbuild/tmp/RtmpkavBUI/Rinst17b5087f71dbf3/twilight’ ----------------------------------- ERROR: package installation failed