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###
### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL wppi
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'wppi' ...
** this is package 'wppi' version '1.15.0'
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Package `OmnipathR` packaged: NA
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: 2025-02-09
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-02-09 20:50:19 UTC; windows
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.6
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.21
[2025-02-09 15:53:30] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-01-21 r87610 ucrt); os=Windows Server 2022 x64 (build 20348); system=x86_64, mingw32; ui=RTerm; language=(EN); collate=C; ctype=English_United States.utf8; tz=America/New_York; date=2025-02-09; pandoc=2.7.3 @ C:/PROGRA~1/Pandoc/ (via rmarkdown); quarto=NA]
[2025-02-09 15:53:30] [INFO]    [OmnipathR] External libraries: [cairo=1.18.2; cairoFT=; pango=; png=1.6.44; jpeg=9.6; tiff=LIBTIFF, Version 4.7.0; tcl=8.6.13; curl=8.10.1; zlib=1.3.1; bzlib=1.0.8, 13-Jul-2019; xz=5.6.3; deflate=1.22; PCRE=10.44 2024-06-07; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=win_iconv; readline=; BLAS=; lapack=; lapack_version=3.12.0]
[2025-02-09 15:53:30] [INFO]    [OmnipathR] CURL: version: 8.10.1; headers: 8.10.1; ssl_version: (OpenSSL/3.4.0) Schannel; libz_version: 1.3; libssh_version: libssh2/1.11.0; libidn_version: NA; host: x86_64-w64-mingw32; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Contains 1 files.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:30] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Package `OmnipathR` packaged: NA
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: 2025-02-09
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-02-09 20:50:19 UTC; windows
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.6
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.21
[2025-02-09 15:53:39] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-01-21 r87610 ucrt); os=Windows Server 2022 x64 (build 20348); system=x86_64, mingw32; ui=RTerm; language=(EN); collate=C; ctype=English_United States.utf8; tz=America/New_York; date=2025-02-09; pandoc=2.7.3 @ C:/PROGRA~1/Pandoc/ (via rmarkdown); quarto=NA]
[2025-02-09 15:53:39] [INFO]    [OmnipathR] External libraries: [cairo=1.18.2; cairoFT=; pango=; png=1.6.44; jpeg=9.6; tiff=LIBTIFF, Version 4.7.0; tcl=8.6.13; curl=8.10.1; zlib=1.3.1; bzlib=1.0.8, 13-Jul-2019; xz=5.6.3; deflate=1.22; PCRE=10.44 2024-06-07; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=win_iconv; readline=; BLAS=; lapack=; lapack_version=3.12.0]
[2025-02-09 15:53:39] [INFO]    [OmnipathR] CURL: version: 8.10.1; headers: 8.10.1; ssl_version: (OpenSSL/3.4.0) Schannel; libz_version: 1.3; libssh_version: libssh2/1.11.0; libidn_version: NA; host: x86_64-w64-mingw32; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Contains 1 files.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:39] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-02-09 15:53:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:40] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-02-09 15:53:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:40] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-02-09 15:53:40] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:40] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Package `OmnipathR` packaged: NA
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: 2025-02-09
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-02-09 20:50:19 UTC; windows
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.6
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.21
[2025-02-09 15:53:43] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-01-21 r87610 ucrt); os=Windows Server 2022 x64 (build 20348); system=x86_64, mingw32; ui=RTerm; language=(EN); collate=C; ctype=English_United States.utf8; tz=America/New_York; date=2025-02-09; pandoc=2.7.3 @ C:/PROGRA~1/Pandoc/ (via rmarkdown); quarto=NA]
[2025-02-09 15:53:43] [INFO]    [OmnipathR] External libraries: [cairo=1.18.2; cairoFT=; pango=; png=1.6.44; jpeg=9.6; tiff=LIBTIFF, Version 4.7.0; tcl=8.6.13; curl=8.10.1; zlib=1.3.1; bzlib=1.0.8, 13-Jul-2019; xz=5.6.3; deflate=1.22; PCRE=10.44 2024-06-07; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=win_iconv; readline=; BLAS=; lapack=; lapack_version=3.12.0]
[2025-02-09 15:53:43] [INFO]    [OmnipathR] CURL: version: 8.10.1; headers: 8.10.1; ssl_version: (OpenSSL/3.4.0) Schannel; libz_version: 1.3; libssh_version: libssh2/1.11.0; libidn_version: NA; host: x86_64-w64-mingw32; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Contains 1 files.
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-02-09 15:53:43] [TRACE]   [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8).
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:44] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-02-09 15:53:44] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)