############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:GSEABase.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings GSEABase_1.69.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/GSEABase.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘GSEABase/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSEABase’ version ‘1.69.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSEABase’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Fatal error: cannot create 'R_TempDir' See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... ERROR Incorrect (un)loading of package shared object. Fatal error: cannot create 'R_TempDir' The system-specific extension for shared objects must not be added. See ?library.dynam. NOTE Fatal error: cannot create 'R_TempDir' Fatal error: cannot create 'R_TempDir' Found the following possibly unsafe calls: Fatal error: cannot create 'R_TempDir' Fatal error: cannot create 'R_TempDir' * checking Rd files ... WARNING Fatal error: cannot create 'R_TempDir' * checking Rd metadata ... NOTE Fatal error: cannot create 'R_TempDir' * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Fatal error: cannot create 'R_TempDir' All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING Fatal error: cannot create 'R_TempDir' Fatal error: cannot create 'R_TempDir' Fatal error: cannot create 'R_TempDir' * checking Rd \usage sections ... WARNING Fatal error: cannot create 'R_TempDir' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Fatal error: cannot create 'R_TempDir' The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... NOTE Fatal error: cannot create 'R_TempDir' * checking for unstated dependencies in examples ... WARNING Fatal error: cannot create 'R_TempDir' * checking files in ‘vignettes’ ...Warning in close.connection(con) : Problem closing connection: No space left on device Error: inferior call failed Execution halted