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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:alabaster.se.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings alabaster.se_1.7.0.tar.gz
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/alabaster.se.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘alabaster.se/DESCRIPTION’ ... OK
* this is package ‘alabaster.se’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘alabaster.se’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  emptyRowRanges.Rd: rowRanges, RangedSummarizedExperiment-class,
    GRangesList-class, mcols, rowData, SummarizedExperiment-class,
    metadata, GRanges-class
  readRangedSummarizedExperiment.Rd: RangedSummarizedExperiment-class,
    readObject, saveObject, readObjectFile, altReadObject
  readSummarizedExperiment.Rd: SummarizedExperiment-class, readObject,
    saveObject, readObjectFile, altReadObject
  saveRangedSummarizedExperiment.Rd: RangedSummarizedExperiment-class,
    altSaveObject
  saveSummarizedExperiment.Rd: SummarizedExperiment-class,
    altSaveObject, DataFrame-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   2. └─alabaster.se::stageObject(se, tmp, "rnaseq")
   3.   └─alabaster.se (local) .local(x, dir, path, child, ...)
   4.     └─base::tryCatch(...)
   5.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   6.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   7.           └─value[[3L]](cond)
  
  [ FAIL 15 | WARN 47 | SKIP 0 | PASS 66 ]
  Error: Test failures
  Execution halted
  
   *** caught segfault ***
  address 0x558, cause 'memory not mapped'
  An irrecoverable exception occurred. R is aborting now ...
  Segmentation fault (core dumped)
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/alabaster.se.Rcheck/00check.log’
for details.