############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:fgsea.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings fgsea_1.33.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/fgsea.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘fgsea/DESCRIPTION’ ... OK * this is package ‘fgsea’ version ‘1.33.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fgsea’ can be installed ... OK * used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ * checking installed package size ... INFO installed size is 9.4Mb sub-directories of 1Mb or more: data 1.1Mb extdata 3.9Mb libs 4.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ...Warning in file.symlink(from, to) : cannot symlink '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ggplot2' to '/tmp/RtmpGfMGzb/RLIBS_ee1eb3573b982/ggplot2', reason 'No space left on device' Error in flink(where, tmplib) : cannot link from /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ggplot2 Execution halted