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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:gpls.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings gpls_1.79.0.tar.gz
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/gpls.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘gpls/DESCRIPTION’ ... OK
* this is package ‘gpls’ version ‘1.79.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  download from 'https://CRAN.R-project.org/src/contrib/PACKAGES' failed
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gpls’ can be installed ... WARNING
Found the following significant warnings:
  Note: break used in wrong context: no loop is visible 
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/gpls.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
glpls1a.Rd: Sections \title, and \name must exist and be unique in Rd files
glpls1a.cv.error.Rd: Sections \title, and \name must exist and be unique in Rd files
glpls1a.logit.all.Rd: Sections \title, and \name must exist and be unique in Rd files
glpls1a.mlogit.Rd: Sections \title, and \name must exist and be unique in Rd files
glpls1a.mlogit.cv.error.Rd: Sections \title, and \name must exist and be unique in Rd files
glpls1a.train.test.error.Rd: Sections \title, and \name must exist and be unique in Rd files
gpls.Rd: Sections \title, and \name must exist and be unique in Rd files
predict.gpls.Rd: Sections \title, and \name must exist and be unique in Rd files
problems found in ‘glpls1a.Rd’, ‘glpls1a.cv.error.Rd’, ‘glpls1a.logit.all.Rd’, ‘glpls1a.mlogit.Rd’, ‘glpls1a.mlogit.cv.error.Rd’, ‘glpls1a.train.test.error.Rd’, ‘gpls.Rd’, ‘predict.gpls.Rd’
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/gpls.Rcheck/00check.log’
for details.