############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc ### ############################################################################## ############################################################################## * checking for file ‘pRoloc/DESCRIPTION’ ... OK * preparing ‘pRoloc’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘v01-pRoloc-tutorial.Rmd’ using rmarkdown Failed to query server: Failed to activate service 'org.freedesktop.timedate1': timed out (service_start_timeout=25000ms) --- finished re-building ‘v01-pRoloc-tutorial.Rmd’ --- re-building ‘v02-pRoloc-ml.Rmd’ using rmarkdown --- finished re-building ‘v02-pRoloc-ml.Rmd’ --- re-building ‘v03-pRoloc-bayesian.Rmd’ using rmarkdown --- finished re-building ‘v03-pRoloc-bayesian.Rmd’ --- re-building ‘v04-pRoloc-goannotations.Rmd’ using rmarkdown --- finished re-building ‘v04-pRoloc-goannotations.Rmd’ --- re-building ‘v05-pRoloc-transfer-learning.Rmd’ using rmarkdown Quitting from lines 143-147 [ap] (v05-pRoloc-transfer-learning.Rmd) Error: processing vignette 'v05-pRoloc-transfer-learning.Rmd' failed with diagnostics: The given dataset: hsapiens_gene_ensembl , is not valid. Correct dataset names can be obtained with the listDatasets() function. --- failed re-building ‘v05-pRoloc-transfer-learning.Rmd’ SUMMARY: processing the following file failed: ‘v05-pRoloc-transfer-learning.Rmd’ Error: Vignette re-building failed. Execution halted