##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data NanoporeRNASeq
###
##############################################################################
##############################################################################


* checking for file ‘NanoporeRNASeq/DESCRIPTION’ ... OK
* preparing ‘NanoporeRNASeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘NanoporeRNASeq.Rmd’ using rmarkdown
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/4bfec75982367_3845'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/4bfec75982367_3845'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/4bfec75982367_3845'

Quitting from NanoporeRNASeq.Rmd:83-87 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  1 remote errors, element index: 1
  5 unevaluated and other errors
  first remote error:
Error in xgb.get.handle(object): 'xgb.Booster' object is corrupted or is from an incompatible XGBoost version.
---
Backtrace:
    ▆
 1. └─bambu::bambu(...)
 2.   └─bambu:::bambu.processReads(...)
 3.     ├─BiocParallel::bplapply(...)
 4.     └─BiocParallel::bplapply(...)
 5.       └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'NanoporeRNASeq.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  5 unevaluated and other errors
  first remote error:
Error in xgb.get.handle(object): 'xgb.Booster' object is corrupted or is from an incompatible XGBoost version.

--- failed re-building ‘NanoporeRNASeq.Rmd’

SUMMARY: processing the following file failed:
  ‘NanoporeRNASeq.Rmd’

Error: Vignette re-building failed.
Execution halted