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###
### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CSOA
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* checking for file ‘CSOA/DESCRIPTION’ ... OK
* preparing ‘CSOA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Advanced-CSOA.Rmd’ using rmarkdown

Quitting from Advanced-CSOA.Rmd:37-60 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Advanced-CSOA.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
--- failed re-building ‘Advanced-CSOA.Rmd’

--- re-building ‘CSOA.Rmd’ using rmarkdown

Quitting from CSOA.Rmd:54-64 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CSOA.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
--- failed re-building ‘CSOA.Rmd’

--- re-building ‘The-CSOA-algorithm.Rmd’ using rmarkdown

Quitting from The-CSOA-algorithm.Rmd:33-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'The-CSOA-algorithm.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
--- failed re-building ‘The-CSOA-algorithm.Rmd’

SUMMARY: processing the following files failed:
  ‘Advanced-CSOA.Rmd’ ‘CSOA.Rmd’ ‘The-CSOA-algorithm.Rmd’

Error: Vignette re-building failed.
Execution halted