############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR ### ############################################################################## ############################################################################## * checking for file ‘ChemmineR/DESCRIPTION’ ... OK * preparing ‘ChemmineR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ChemmineR.Rmd’ using rmarkdown Quitting from ChemmineR.Rmd:537-539 [unnamed-chunk-39] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `file()`: ! cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf' --- Backtrace: ▆ 1. └─ChemmineR::read.SDFset(...) 2. └─ChemmineR::read.SDFstr(sdfstr = sdfstr) 3. └─base::readLines(sdfstr) 4. └─base::file(con, "r") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics: cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf' --- failed re-building ‘ChemmineR.Rmd’ SUMMARY: processing the following file failed: ‘ChemmineR.Rmd’ Error: Vignette re-building failed. Execution halted