############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeoTcgaData ### ############################################################################## ############################################################################## * checking for file ‘GeoTcgaData/DESCRIPTION’ ... OK * preparing ‘GeoTcgaData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GeoTcgaData.Rmd’ using rmarkdown Quitting from GeoTcgaData.Rmd:141-172 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'ChAMP' --- Backtrace: ▆ 1. └─base::library(ChAMP) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GeoTcgaData.Rmd' failed with diagnostics: there is no package called 'ChAMP' --- failed re-building ‘GeoTcgaData.Rmd’ SUMMARY: processing the following file failed: ‘GeoTcgaData.Rmd’ Error: Vignette re-building failed. Execution halted