############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r MEAL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MEAL ### ############################################################################## ############################################################################## * checking for file 'MEAL/DESCRIPTION' ... OK * preparing 'MEAL': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'MEAL.Rmd' using rmarkdown Quitting from MEAL.Rmd:193-196 [Regional plot 1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `errorHandler()`: ! Internal Server Error --- Backtrace: ▆ 1. └─MEAL::plotRegion(resAdj, targetRange) 2. └─Gviz::IdeogramTrack(genome = genome, chromosome = as.character(seqnames(range))) 3. └─methods::new(...) 4. ├─methods::initialize(value, ...) 5. └─Gviz::initialize(value, ...) 6. └─Gviz (local) .local(.Object, ...) 7. └─Gviz:::.cacheGenomes(genome = genome) 8. ├─Gviz::.doCache(...) 9. │ ├─BiocGenerics::eval(expression, envir = callEnv) 10. │ └─base::eval(expression, envir = callEnv) 11. │ └─base::eval(expression, envir = callEnv) 12. ├─rtracklayer::getTable(query) 13. └─rtracklayer::getTable(query) 14. └─rtracklayer (local) .local(object, ...) 15. ├─restfulr::read(url$getData$track, query) 16. └─restfulr::read(url$getData$track, query) 17. ├─base::tryCatch(...) 18. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 19. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 20. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 21. └─x@protocol$read(x, cacheInfo) 22. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler) 23. └─restfulr (local) errorHandler(responseError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MEAL.Rmd' failed with diagnostics: Internal Server Error --- failed re-building 'MEAL.Rmd' --- re-building 'caseExample.Rmd' using rmarkdown Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building 'caseExample.Rmd' SUMMARY: processing the following file failed: 'MEAL.Rmd' Error: Vignette re-building failed. Execution halted