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### Running command:
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###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MouseFM.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MouseFM_1.16.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/MouseFM.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MouseFM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MouseFM' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MouseFM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'MouseFM/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("\n  ---------\n  For example usage please run: vignette('MouseFM')\n  \n  Support me: http://matthiasmunz.de/support_me\n\n  Citation appreciated:\n  Munz M, Khodaygani M, Aherrahrou Z, Busch H, Wohlers I (2021) In silico candidate variant and gene identification using inbred mouse strains. PeerJ. doi:10.7717/peerj.11017\n  \n  Github Repo: https://github.com/matmu/MouseFM\n  MouseFM Backend: https://github.com/matmu/MouseFM-Backend\n  ---------",     domain = NULL, appendLF = TRUE)

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'MouseFM-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: annotate_mouse_genes
> ### Title: Annotate with genes
> ### Aliases: annotate_mouse_genes
> 
> ### ** Examples
> 
> geno = finemap("chr1",
+   start = 5000000, end = 6000000,
+   strain1 = c("C57BL_6J"), strain2 = c("AKR_J", "A_J", "BALB_cJ")
+ )
Query chr1:5,000,000-6,000,000
> 
> genes = annotate_mouse_genes(geno, 50000)
Error in `req_perform()`:
! HTTP 500 Internal Server Error.
Backtrace:
    ▆
 1. └─MouseFM::annotate_mouse_genes(geno, 50000)
 2.   └─biomaRt::useMart("ENSEMBL_MART_ENSEMBL", host = "https://nov2020.archive.ensembl.org")
 3.     └─biomaRt:::.useMart(...)
 4.       └─biomaRt:::.listMarts(...)
 5.         └─biomaRt:::bmRequest(...)
 6.           └─httr2::req_perform(request)
 7.             └─httr2:::handle_resp(req, resp, error_call = error_call)
 8.               └─httr2:::resp_abort(resp, req, body, call = error_call)
 9.                 └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  'F:/biocbuild/bbs-3.20-bioc/meat/MouseFM.Rcheck/00check.log'
for details.