############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsDataHub ### ############################################################################## ############################################################################## * checking for file ‘MsDataHub/DESCRIPTION’ ... OK * preparing ‘MsDataHub’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MsDataHub.Rmd’ using rmarkdown Quitting from MsDataHub.Rmd:70-73 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error: Can not open file /home/biocbuild/.cache/R/ExperimentHub/3bc43e5654645f_7862! Original error was: Error in eval(expr, envir): [SAXParser::parse()] Empty tag at offset 23330813. --- Backtrace: ▆ 1. ├─Spectra::Spectra(f) 2. └─Spectra::Spectra(f) 3. └─Spectra (local) .local(object, ...) 4. └─Spectra:::.create_spectra(...) 5. ├─ProtGenerics::backendInitialize(...) 6. └─Spectra::backendInitialize(...) 7. └─Spectra (local) .local(object, ...) 8. ├─base::do.call(...) 9. ├─BiocParallel::bplapply(...) 10. └─BiocParallel::bplapply(...) 11. └─BiocParallel:::.bpinit(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsDataHub.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error: Can not open file /home/biocbuild/.cache/R/ExperimentHub/3bc43e5654645f_7862! Original error was: Error in eval(expr, envir): [SAXParser::parse()] Empty tag at offset 23330813. --- failed re-building ‘MsDataHub.Rmd’ SUMMARY: processing the following file failed: ‘MsDataHub.Rmd’ Error: Vignette re-building failed. Execution halted