############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE ### ############################################################################## ############################################################################## * checking for file ‘SPONGE/DESCRIPTION’ ... OK * preparing ‘SPONGE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SPONGE.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "SPONGE vignette", and the latter is "Sparse Partial correlation ON Gene Expression with SPONGE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. Could not fetch https://raw.githubusercontent.com/mlist/SPONGE/master/vignettes/overview.png HttpExceptionRequest Request { host = "raw.githubusercontent.com" port = 443 secure = True requestHeaders = [] path = "/mlist/SPONGE/master/vignettes/overview.png" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'SPONGE.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘SPONGE.Rmd’ --- re-building ‘spongEffects.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "spongEffects vignette", and the latter is "spongeEffects.Rmd". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘spongEffects.Rmd’ SUMMARY: processing the following file failed: ‘SPONGE.Rmd’ Error: Vignette re-building failed. Execution halted