############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SharedObject ### ############################################################################## ############################################################################## * checking for file ‘SharedObject/DESCRIPTION’ ... OK * preparing ‘SharedObject’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) ----------------------------------- Warning: SystemRequirements specified C++11: support has been removed * installing *source* package ‘SharedObject’ ... ** this is package ‘SharedObject’ version ‘1.26.0’ ** using staged installation checking for gcc... gcc -std=gnu2x checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu2x accepts -g... yes checking for gcc -std=gnu2x option to accept ISO C89... none needed checking for shm_open in -lrt... yes configure: creating ./config.status config.status: creating src/Makevars ** libs specified C++11 using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’ g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c C_interface.cpp -o C_interface.o C_interface.cpp: In function ‘int C_getObject(SEXP)’: C_interface.cpp:166:16: error: ‘OBJECT’ was not declared in this scope 166 | return OBJECT(x); | ^~~~~~ C_interface.cpp: In function ‘void C_setObject(SEXP, int)’: C_interface.cpp:171:9: error: ‘SET_OBJECT’ was not declared in this scope 171 | SET_OBJECT(x, i); | ^~~~~~~~~~ C_interface.cpp: In function ‘bool C_ISS4(SEXP)’: C_interface.cpp:176:16: error: ‘IS_S4_OBJECT’ was not declared in this scope 176 | return IS_S4_OBJECT(x); | ^~~~~~~~~~~~ C_interface.cpp: In function ‘void C_SETS4(SEXP)’: C_interface.cpp:181:9: error: ‘SET_S4_OBJECT’ was not declared in this scope 181 | SET_S4_OBJECT(x); | ^~~~~~~~~~~~~ C_interface.cpp: In function ‘void C_UNSETS4(SEXP)’: C_interface.cpp:186:9: error: ‘UNSET_S4_OBJECT’ was not declared in this scope 186 | UNSET_S4_OBJECT(x); | ^~~~~~~~~~~~~~~ make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:197: C_interface.o] Error 1 ERROR: compilation failed for package ‘SharedObject’ * removing ‘/tmp/RtmpcOehK3/Rinst20312a571d0943/SharedObject’ ----------------------------------- ERROR: package installation failed