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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantExperiment
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* checking for file ‘VariantExperiment/DESCRIPTION’ ... OK
* preparing ‘VariantExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VariantExperiment-class.Rmd’ using rmarkdown

Quitting from VariantExperiment-class.Rmd:244-248 [makeVariantExperimentFromVCF]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqGetData()`:
! The GDS node "$ref" does not exist.
---
Backtrace:
    ▆
 1. └─VariantExperiment::makeVariantExperimentFromVCF(vcf, out.dir = tempfile())
 2.   └─VariantExperiment::makeVariantExperimentFromGDS(...)
 3.     └─VariantExperiment::makeVariantExperimentFromSEQGDS(...)
 4.       └─VariantExperiment:::.rowRanges_seqgds(...)
 5.         └─VariantExperiment:::.granges_seqgds(seqgdsfile)
 6.           ├─SeqArray::granges(f)
 7.           └─SeqArray::granges(f)
 8.             └─SeqArray::seqGetData(x, "$ref")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'VariantExperiment-class.Rmd' failed with diagnostics:
The GDS node "$ref" does not exist.
--- failed re-building ‘VariantExperiment-class.Rmd’

SUMMARY: processing the following file failed:
  ‘VariantExperiment-class.Rmd’

Error: Vignette re-building failed.
Execution halted