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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:fenr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings fenr_1.4.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/fenr.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fenr/DESCRIPTION’ ... OK
* this is package ‘fenr’ version ‘1.4.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fenr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘fenr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fetch_go
> ### Title: Get Gene Ontology (GO) data
> ### Aliases: fetch_go
> 
> ### ** Examples
> 
> # Fetch GO data from Ensembl
> go_data_ensembl <- fetch_go(dataset = "scerevisiae_gene_ensembl", on_error = "warn")
Warning: Failed to open 'http://www.ensembl.org/biomart/martservice?query=<?xml%20version='1.0'%20encoding='UTF-8'?><!DOCTYPE%20Query><Query%20virtualSchemaName%20=%20'default'%20uniqueRows%20=%20'1'%20count='0'%20datasetConfigVersion='0.6'%20header='1'%20formatter='TSV'%20requestid='biomaRt'><Dataset%20name%20=%20'scerevisiae_gene_ensembl'><Attribute%20name%20=%20'ensembl_gene_id'/><Attribute%20name%20=%20'external_gene_name'/><Attribute%20name%20=%20'go_id'/><Attribute%20name%20=%20'go_linkage_type'/></Dataset></Query>': The requested URL returned error: 500
Error in open.connection(3L, "rb") : cannot open the connection
Calls: fetch_go ... <Anonymous> -> vroom_ -> <Anonymous> -> open.connection
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
      "rb")`: cannot open the connection
  Backtrace:
      ▆
   1. ├─fenr::fetch_go(dataset = dataset, on_error = "ignore") at test_go.R:103:3
   2. │ └─fenr:::fetch_go_from_bm(dataset, use_cache = use_cache, on_error = on_error)
   3. │   └─fenr:::fetch_go_genes_bm(dataset, use_cache = use_cache, on_error = on_error)
   4. │     └─readr::read_tsv(req, show_col_types = FALSE)
   5. │       └─vroom::vroom(...)
   6. │         └─vroom:::vroom_(...)
   7. ├─base (local) `<fn>`(`<curl>`, "rb")
   8. └─base::open.connection(`<curl>`, "rb")
  
  [ FAIL 1 | WARN 1 | SKIP 1 | PASS 310 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/fenr.Rcheck/00check.log’
for details.