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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=156<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 24 iterations

cluster 2(N=95) has 2 sub-cluster at 2 (8), ICL=118<>30
split 2 into 2 clusters
cluster 1(N=208) has 2 sub-cluster at 2 (4), ICL=31<>30
split 1 into 2 clusters
cluster 1(N=208) has 2 sub-cluster at 2 (4), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations

cluster 4(N=80) has 2 sub-cluster at 2 (6), ICL=93<>34
split 4 into 2 clusters
cluster 2(N=79) has 2 sub-cluster at 2 (8), ICL=45<>34
split 2 into 2 clusters
cluster 3(N=57) has 2 sub-cluster at 2 (20), ICL=11<>34
cluster 2(N=79) has 2 sub-cluster at 2 (8), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 11 iterations

cluster 5(N=64) has 2 sub-cluster at 2 (5), ICL=61<>37
split 5 into 2 clusters
cluster 4(N=138) has 8 sub-cluster at 8 (28), ICL=21<>37
cluster 6(N=129) has 2 sub-cluster at 2 (38), ICL=20<>37
cluster 2(N=41) has 2 sub-cluster at 2 (13), ICL=16<>37
cluster 3(N=64) has 2 sub-cluster at 2 (24), ICL=16<>37
cluster 2(N=41) has 2 sub-cluster at 2 (13), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 7 iterations

cluster 7(N=242) has 2 sub-cluster at 2 (9), ICL=51<>41
split 7 into 2 clusters
cluster 2(N=103) has 2 sub-cluster at 2 (6), ICL=38<>41
cluster 4(N=291) has 2 sub-cluster at 2 (6), ICL=23<>41
cluster 3(N=144) has 3 sub-cluster at 3 (30), ICL=21<>41
cluster 5(N=96) has 2 sub-cluster at 2 (12), ICL=15<>41
cluster 6(N=29) has 2 sub-cluster at 2 (11), ICL=8.7<>41
cluster 2(N=103) has 2 sub-cluster at 2 (6), ICL=0<>41
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->8 N=4841
EM 8 takes 0 mins, 11 iterations

cluster 2(N=193) has 2 sub-cluster at 2 (6), ICL=58<>45
split 2 into 2 clusters
cluster 6(N=79) has 3 sub-cluster at 3 (15), ICL=30<>45
cluster 3(N=254) has 2 sub-cluster at 2 (6), ICL=26<>45
cluster 7(N=452) has 3 sub-cluster at 3 (68), ICL=24<>45
cluster 8(N=33) has 3 sub-cluster at 3 (16), ICL=20<>45
cluster 5(N=198) has 2 sub-cluster at 2 (10), ICL=19<>45
cluster 4(N=562) has 2 sub-cluster at 2 (6), ICL=15<>45
cluster 2(N=193) has 2 sub-cluster at 2 (6), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0.017 mins, 7 iterations

cluster 4(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48
split 4 into 3 clusters
cluster 5(N=1121) has 2 sub-cluster at 2 (8), ICL=49<>48
split 5 into 2 clusters
cluster 7(N=156) has 4 sub-cluster at 4 (16), ICL=41<>48
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 8(N=916) has 4 sub-cluster at 4 (12), ICL=21<>48
cluster 3(N=75) has 4 sub-cluster at 5 (57), ICL=1.1<>48
cluster 2(N=316) has 8 sub-cluster at 8 (30), ICL=0.029<>48
cluster 2(N=316) has 8 sub-cluster at 8 (30), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->12 N=9682
EM 12 takes 0.017 mins, 8 iterations

cluster 11(N=906) has 3 sub-cluster at 3 (13), ICL=40<>48
cluster 12(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 6(N=88) has 5 sub-cluster at 6 (52), ICL=38<>48
cluster 9(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 10(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 8(N=424) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 4(N=363) has 7 sub-cluster at 7 (50), ICL=16<>48
cluster 3(N=74) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=6.4<>48
cluster 5(N=172) has 3 sub-cluster at 4 (14), ICL=5.2<>48
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations

Process completed at8

Major Iteration (Trans) (6/4) takes 1 mins
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (14), ICL=165<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (14), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 12 iterations

cluster 1(N=88) has 3 sub-cluster at 4 (9), ICL=97<>25
split 1 into 3 clusters
cluster 2(N=215) has 2 sub-cluster at 2 (6), ICL=42<>25
split 2 into 2 clusters
cluster 1(N=88) has 3 sub-cluster at 4 (9), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 18 iterations

cluster 4(N=51) has 2 sub-cluster at 2 (6), ICL=56<>28
split 4 into 2 clusters
cluster 1(N=72) has 4 sub-cluster at 4 (13), ICL=16<>28
cluster 3(N=51) has 3 sub-cluster at 3 (16), ICL=11<>28
cluster 5(N=407) has 2 sub-cluster at 2 (12), ICL=10<>28
cluster 2(N=30) has 2 sub-cluster at 2 (100), ICL=2.4<>28
cluster 1(N=72) has 4 sub-cluster at 4 (13), ICL=0<>28
Model Refinement takes 0.033 mins(max 3: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 17 iterations

cluster 2(N=44) has 4 sub-cluster at 4 (43), ICL=43<>31
split 2 into 4 clusters
cluster 1(N=165) has 2 sub-cluster at 2 (13), ICL=32<>31
split 1 into 2 clusters
cluster 5(N=33) has 3 sub-cluster at 3 (9), ICL=30<>31
cluster 4(N=71) has 3 sub-cluster at 3 (5), ICL=14<>31
cluster 3(N=132) has 3 sub-cluster at 3 (13), ICL=12<>31
cluster 6(N=768) has 8 sub-cluster at 8 (18), ICL=3.2<>31
cluster 1(N=165) has 2 sub-cluster at 2 (13), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->10 N=2420
EM 9 takes 0 mins, 15 iterations

cluster 6(N=242) has 2 sub-cluster at 2 (7), ICL=43<>34
split 6 into 2 clusters
cluster 8(N=51) has 2 sub-cluster at 2 (6), ICL=37<>34
split 8 into 2 clusters
cluster 7(N=163) has 2 sub-cluster at 2 (10), ICL=26<>34
cluster 1(N=253) has 6 sub-cluster at 7 (25), ICL=9.9<>34
cluster 4(N=40) has 2 sub-cluster at 2 (16), ICL=6.4<>34
cluster 3(N=41) has 4 sub-cluster at 4 (8), ICL=5<>34
cluster 9(N=1617) has 4 sub-cluster at 4 (7), ICL=4<>34
cluster 1(N=253) has 6 sub-cluster at 7 (25), ICL=0<>34
Model Refinement takes 0.13 mins(max 9: 0.05)
Fit Model 5 of (6/10) K=9->11 N=4841
EM 10 takes 0.017 mins, 17 iterations

cluster 7(N=275) has 3 sub-cluster at 3 (9), ICL=40<>37
split 7 into 3 clusters
cluster 10(N=3256) has 3 sub-cluster at 3 (7), ICL=35<>37
cluster 2(N=126) has 3 sub-cluster at 6 (32), ICL=22<>37
cluster 9(N=43) has 2 sub-cluster at 2 (100), ICL=21<>37
cluster 8(N=65) has 2 sub-cluster at 2 (27), ICL=18<>37
cluster 5(N=464) has 4 sub-cluster at 4 (13), ICL=14<>37
cluster 4(N=146) has 6 sub-cluster at 7 (28), ICL=13<>37
cluster 3(N=59) has 4 sub-cluster at 4 (33), ICL=7.8<>37
cluster 1(N=472) has 8 sub-cluster at 8 (33), ICL=5.5<>37
cluster 1(N=472) has 8 sub-cluster at 8 (33), ICL=0<>37
Model Refinement takes 0.17 mins(max 10: 0.067)
Fit Model 6 of (6/10) K=10->12 N=9682
EM 12 takes 0.017 mins, 9 iterations

cluster 12(N=6460) has 3 sub-cluster at 3 (7), ICL=81<>40
split 12 into 3 clusters
cluster 5(N=906) has 3 sub-cluster at 3 (13), ICL=44<>40
split 5 into 3 clusters
cluster 10(N=124) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 2(N=339) has 2 sub-cluster at 2 (11), ICL=25<>40
cluster 9(N=89) has 4 sub-cluster at 4 (25), ICL=20<>40
cluster 3(N=103) has 3 sub-cluster at 3 (36), ICL=20<>40
cluster 7(N=354) has 7 sub-cluster at 7 (29), ICL=15<>40
cluster 8(N=185) has 7 sub-cluster at 8 (30), ICL=14<>40
cluster 4(N=326) has 6 sub-cluster at 7 (16), ICL=12<>40
cluster 11(N=75) has 3 sub-cluster at 3 (89), ICL=9<>40
cluster 2(N=339) has 2 sub-cluster at 2 (11), ICL=0<>40
Model Refinement takes 0.25 mins(max 12: 0.067)
Fit Model 7 of (6/10) K=12->16 N=9682
EM 16 takes 0.017 mins, 8 iterations

cluster 7(N=63) has 2 sub-cluster at 2 (100), ICL=49<>40
split 7 into 2 clusters
cluster 13(N=74) has 2 sub-cluster at 2 (8), ICL=47<>40
split 13 into 2 clusters
cluster 12(N=124) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 3(N=100) has 3 sub-cluster at 3 (38), ICL=20<>40
cluster 2(N=363) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 11(N=85) has 3 sub-cluster at 3 (14), ICL=19<>40
cluster 9(N=364) has 5 sub-cluster at 6 (30), ICL=16<>40
cluster 4(N=326) has 7 sub-cluster at 8 (18), ICL=13<>40
cluster 10(N=174) has 5 sub-cluster at 6 (30), ICL=11<>40
cluster 16(N=304) has 5 sub-cluster at 5 (47), ICL=11<>40
cluster 5(N=381) has 7 sub-cluster at 8 (26), ICL=4.9<>40
cluster 2(N=363) has 2 sub-cluster at 2 (6), ICL=0<>40
Model Refinement takes 0.35 mins(max 14: 0.05)
Fit Model 8 of (6/10) K=16->18 N=9682
EM 17 takes 0.12 mins, 50 iterations

cluster 9(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 13(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 2(N=403) has 2 sub-cluster at 2 (6), ICL=21<>40
cluster 3(N=100) has 3 sub-cluster at 3 (39), ICL=20<>40
cluster 12(N=82) has 3 sub-cluster at 3 (12), ICL=20<>40
cluster 10(N=370) has 4 sub-cluster at 4 (23), ICL=19<>40
cluster 11(N=170) has 7 sub-cluster at 8 (42), ICL=16<>40
cluster 4(N=326) has 7 sub-cluster at 8 (18), ICL=13<>40
cluster 14(N=73) has 3 sub-cluster at 4 (36), ICL=11<>40
cluster 17(N=308) has 7 sub-cluster at 8 (37), ICL=3.9<>40
cluster 7(N=46) has 3 sub-cluster at 3 (7), ICL=3.6<>40
cluster 5(N=379) has 7 sub-cluster at 7 (38), ICL=2.6<>40
cluster 2(N=403) has 2 sub-cluster at 2 (6), ICL=0<>40
Model Refinement takes 0.33 mins(max 16: 0.067)
Fit Model 9 of (6/10) K=17->17 N=9682
EM 17 takes 0.12 mins, 50 iterations

Process completed at9

Major Iteration (Trans) (6/4) takes 1.7 mins
Fit Model 1 of 10 with 8 clusters
=> results in  8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in  13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in  19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in  21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in  21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.15 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’

SUMMARY: processing the following file failed:
  ‘immunoClust.Rnw’

Error: Vignette re-building failed.
Execution halted