############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data megadepth ### ############################################################################## ############################################################################## * checking for file ‘megadepth/DESCRIPTION’ ... OK * preparing ‘megadepth’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘megadepth.Rmd’ using rmarkdown sh: /private/tmp/RtmpY2ZtDT/megadepth: Bad CPU type in executable Quitting from megadepth.Rmd:150-158 [example] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! '/tmp/RtmpY2ZtDT/bw.mean.annotation.tsv' does not exist. --- Backtrace: ▆ 1. ├─megadepth::get_coverage(example_bw, op = "mean", annotation = annotation_file) 2. │ └─megadepth::read_coverage(paste0(prefix, ".annotation.tsv")) 3. │ └─megadepth::read_coverage_table(tsv_file) 4. │ └─readr::read_delim(...) 5. │ └─vroom::vroom(...) 6. │ └─vroom:::vroom_(...) 7. └─vroom (local) ``("/tmp/RtmpY2ZtDT/bw.mean.annotation.tsv") 8. └─vroom:::check_path(path) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'megadepth.Rmd' failed with diagnostics: '/tmp/RtmpY2ZtDT/bw.mean.annotation.tsv' does not exist. --- failed re-building ‘megadepth.Rmd’ SUMMARY: processing the following file failed: ‘megadepth.Rmd’ Error: Vignette re-building failed. Execution halted