############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data psygenet2r ### ############################################################################## ############################################################################## * checking for file ‘psygenet2r/DESCRIPTION’ ... OK * preparing ‘psygenet2r’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘case_study.Rmd’ using rmarkdown 2025-03-21 05:34:28.777 R[56052:311028131] XType: Using static font registry. Quitting from case_study.Rmd:116-124 [search_multiple] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `genes[, c(1, 2)]`: ! incorrect number of dimensions --- Backtrace: ▆ 1. └─psygenet2r::psygenetGene(...) 2. └─psygenet2r:::ListPsyGeNETIds(database, "Gene") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'case_study.Rmd' failed with diagnostics: incorrect number of dimensions --- failed re-building ‘case_study.Rmd’ --- re-building ‘general_overview.Rmd’ using rmarkdown Quitting from general_overview.Rmd:91-94 [dataGenet1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `genes[, c(1, 2)]`: ! incorrect number of dimensions --- Backtrace: ▆ 1. └─psygenet2r::psygenetGene(gene = 4852, database = "ALL") 2. └─psygenet2r:::ListPsyGeNETIds(database, "Gene") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'general_overview.Rmd' failed with diagnostics: incorrect number of dimensions --- failed re-building ‘general_overview.Rmd’ SUMMARY: processing the following files failed: ‘case_study.Rmd’ ‘general_overview.Rmd’ Error: Vignette re-building failed. Execution halted