############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rDGIdb ### ############################################################################## ############################################################################## * checking for file ‘rDGIdb/DESCRIPTION’ ... OK * preparing ‘rDGIdb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rnw’ using knitr Quitting from vignette.Rnw:61-63 [query-dgidb-first] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! Timeout was reached [old.dgidb.org]: Failed to connect to old.dgidb.org port 443 after 10002 ms: Timeout was reached --- Backtrace: x 1. +-rDGIdb::queryDGIdb(genes) 2. | \-rDGIdb:::queryDgidbPost(...) 3. | \-httr::POST(url = url, body = body, encode = "multipart") 4. | \-httr:::request_perform(req, hu$handle$handle) 5. | +-httr:::request_fetch(req$output, req$url, handle) 6. | \-httr:::request_fetch.write_memory(req$output, req$url, handle) 7. | \-curl::curl_fetch_memory(url, handle = handle) 8. \-curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rnw' failed with diagnostics: Timeout was reached [old.dgidb.org]: Failed to connect to old.dgidb.org port 443 after 10002 ms: Timeout was reached --- failed re-building ‘vignette.Rnw’ SUMMARY: processing the following file failed: ‘vignette.Rnw’ Error: Vignette re-building failed. Execution halted