############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data segmenter ### ############################################################################## ############################################################################## * checking for file ‘segmenter/DESCRIPTION’ ... OK * preparing ‘segmenter’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘segmenter.Rmd’ using rmarkdown Quitting from segmenter.Rmd:539-558 [add_tracks] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `errorHandler()`: ! Internal Server Error --- Backtrace: ▆ 1. └─Gviz::IdeogramTrack(genome = "hg18", chromosome = 11) 2. └─methods::new(...) 3. ├─methods::initialize(value, ...) 4. └─Gviz::initialize(value, ...) 5. └─Gviz (local) .local(.Object, ...) 6. └─Gviz:::.cacheGenomes(genome = genome) 7. ├─Gviz::.doCache(...) 8. │ ├─BiocGenerics::eval(expression, envir = callEnv) 9. │ └─base::eval(expression, envir = callEnv) 10. │ └─base::eval(expression, envir = callEnv) 11. ├─rtracklayer::getTable(query) 12. └─rtracklayer::getTable(query) 13. └─rtracklayer (local) .local(object, ...) 14. ├─restfulr::read(url$getData$track, query) 15. └─restfulr::read(url$getData$track, query) 16. ├─base::tryCatch(...) 17. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 18. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 20. └─x@protocol$read(x, cacheInfo) 21. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler) 22. └─restfulr (local) errorHandler(responseError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'segmenter.Rmd' failed with diagnostics: Internal Server Error --- failed re-building ‘segmenter.Rmd’ SUMMARY: processing the following file failed: ‘segmenter.Rmd’ Error: Vignette re-building failed. Execution halted