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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sitadela.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sitadela_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/sitadela.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sitadela/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sitadela’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sitadela’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... NOTE
sitadela database found at /Users/biocbuild/Library/Application Support/org.R-project.R/R/sitadela directory

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘sitadela-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getAnnotation
> ### Title: Annotation downloader
> ### Aliases: getAnnotation
> 
> ### ** Examples
> 
> mm10Genes <- getAnnotation("mm10","gene")
Using Ensembl host https://jan2024.archive.ensembl.org
Error in `req_perform()`:
! HTTP 500 Internal Server Error.
Backtrace:
     ▆
  1. └─sitadela::getAnnotation("mm10", "gene")
  2.   └─sitadela:::getEnsemblAnnotation(org, type, ver, tv)
  3.     └─biomaRt::useEnsembl(biomart = dat, host = host, dataset = .getDataset(org))
  4.       └─biomaRt:::.listMarts(...)
  5.         └─biomaRt:::bmRequest(...)
  6.           └─httr2::req_perform(request)
  7.             └─httr2:::handle_resp(req, resp, error_call = error_call)
  8.               └─httr2:::resp_failure_cnd(req, resp, error_call = error_call)
  9.                 ├─rlang::catch_cnd(...)
 10.                 │ ├─rlang::eval_bare(...)
 11.                 │ ├─base::tryCatch(...)
 12.                 │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.                 │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.                 │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 15.                 │ └─base::force(expr)
 16.                 └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
  FAILURE in test_sitadela_known: Error in checkTrue(all(testResult)) : Test not TRUE
  
  
  Test files with failing tests
  
     test_sitadela.R 
       test_sitadela_ensembl_often 
       test_sitadela_ensembl_rare 
       test_sitadela_known 
  
  
  Error in BiocGenerics:::testPackage("sitadela") : 
    unit tests failed for package sitadela
  In addition: There were 17 warnings (use warnings() to see them)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/sitadela.Rcheck/00check.log’
for details.