############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope ### ############################################################################## ############################################################################## * checking for file ‘MetaScope/DESCRIPTION’ ... OK * preparing ‘MetaScope’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MetaScopeTutorial.Rmd’ using rmarkdown --- finished re-building ‘MetaScopeTutorial.Rmd’ --- re-building ‘MetaScope_vignette.Rmd’ using rmarkdown Quitting from MetaScope_vignette.Rmd:125-137 [target_lib] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `if (parent_kingdom %in% to_grab) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─base::sapply(...) 2. └─base::lapply(X = X, FUN = FUN, ...) 3. └─MetaScope (local) FUN(X[[i]], ...) 4. └─MetaScope:::download_parentkingdom(parent_kingdom, quiet) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MetaScope_vignette.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘MetaScope_vignette.Rmd’ SUMMARY: processing the following file failed: ‘MetaScope_vignette.Rmd’ Error: Vignette re-building failed. Execution halted