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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:curatedPCaData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings curatedPCaData_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/curatedPCaData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* this is package ‘curatedPCaData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curatedPCaData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
getPCaSummaryStudies            195.257  5.218 220.555
getPCaSummarySamples             26.172  0.845  29.937
getPCaSummarySurv                26.204  0.672  29.753
getPCaSummaryTable               25.994  0.752  29.469
curatedPCaDatasets_abida         17.007  0.815  19.074
curatedPCaDatasets_taylor        15.524  0.437  17.273
curatedPCaDatasets_tcga          13.582  0.696  15.434
getPCa                           13.707  0.413  15.416
curatedPCaDatasets_barbieri      12.799  0.815  14.846
curatedPCaDatasets_ren           13.003  0.353  14.619
curatedPCaDatasets_sun           11.721  0.321  14.075
curatedPCaDatasets_weiner        11.552  0.444  13.037
curatedPCaDatasets_kim           10.891  0.399  12.403
curatedPCaDatasets_icgcca        10.653  0.441  12.460
curatedPCaDatasets_friedrich     10.631  0.432  12.213
curatedPCaDatasets_kunderfranco  10.740  0.321  12.930
curatedPCaDatasets_igc           10.608  0.315  11.908
curatedPCaDatasets_chandran      10.234  0.318  11.503
curatedPCaDatasets_wang          10.219  0.274  11.501
curatedPCaDatasets_wallace        9.979  0.272  11.431
curatedPCaDatasets_true           8.800  0.279  10.409
curatedPCaDatasets_barwick        8.064  0.244   9.109
curatedPCaDatasets_baca           4.809  0.496   5.877
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘native_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK