AnnotationDbi

Annotation Database Interface

Bioconductor version: Release (2.7)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("AnnotationDbi")    

Documentation

PDF	R Script	AnnotationDbi: How to use the ".db" annotation packages
PDF	R Script	Creating an annotation package with a new database schema
PDF	R Script	Creating probe packages
PDF	R Script	SQLForge: An easy way to create a new annotation package with a standard database schema.

Reference Manual

Details

biocViews	Annotation, Infrastructure
Depends	R, methods, utils, Biobase
Imports	methods, utils, Biobase, DBI, RSQLite
Suggests	DBI, RSQLite, hgu95av2.db, GO.db, human.db0, hgu95av2cdf, affy, KEGG.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	Category, ChromHeatMap, GOSemSim, PAnnBuilder, PGSEA, Resourcerer, RpsiXML, annotate, attract, eisa, gene2pathway, goProfiles, oneChannelGUI, ontoTools, pathRender, topGO
Imports Me	BioNet, Category, ChromHeatMap, CoCiteStats, ExpressionView, GGBase, GGtools, GOstats, GSEABase, GlobalAncova, HTSanalyzeR, PAnnBuilder, PCpheno, PatientGeneSets, SLGI, ScISI, adSplit, affycoretools, annaffy, annotate, attract, domainsignatures, genefilter, geneplotter, globaltest, goseq, keggorthology, lumi, qpgraph, safe, tigre, topGO
Suggests Me	BiocCaseStudies, ExpressionView, GeneAnswers, GeneRegionScan, sigPathway
Version	1.12.0

Package Downloads

Package Source	AnnotationDbi_1.12.0.tar.gz
Windows Binary	AnnotationDbi_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	AnnotationDbi_1.12.0.tgz
Package Downloads Report	Download Stats