GGBase

infrastructure for genetics of gene expression (c) 2008 VJ Carey

Bioconductor version: Release (2.7)

infrastructure for dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey

Maintainer: Vince Carey

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GGBase")    

Documentation

PDF R Script GGBase overview
PDF R Script smlSet construction overview
PDF R Script snp location metadata overview

Reference Manual

Details

biocViews SNP, GeneticVariability, Genetics, Bioinformatics
Depends R, methods, Biobase, snpMatrix, RSQLite
Imports AnnotationDbi, GSEABase
Suggests illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20071016, SNPlocs.Hsapiens.dbSNP.20090506
System Requirements
License Artistic-2.0
URL
Depends On Me GGtools
Imports Me
Suggests Me
Version 3.10.0

Package Downloads

Package Source GGBase_3.10.0.tar.gz
Windows Binary GGBase_3.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GGBase_3.10.0.tgz
Package Downloads Report Download Stats

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