copa

Functions to perform cancer outlier profile analysis.

Bioconductor version: Release (2.7)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("copa")    

Documentation

PDF

R Script

copa Overview

Reference Manual

Details

biocViews	OneChannel, TwoChannel, DifferentialExpression, Visualization
Depends	Biobase, methods
Imports
Suggests	colonCA
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.18.0

Package Downloads

Package Source	copa_1.18.0.tar.gz
Windows Binary	copa_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	copa_1.18.0.tgz
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