imageHTS

Analysis of high-throughput microscopy-based screens

Bioconductor version: Release (2.7)

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote screen data, facilitating the dissemination of high-throughput microscopy-based screens.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Gregoire Pau

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("imageHTS")    

Documentation

PDF

R Script

Analysis of high-throughput microscopy-based screens with imageHTS

Reference Manual

Details

biocViews	CellBasedAssays, Visualization, Preprocessing
Depends	R, EBImage, cellHTS2
Imports	tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Suggests
System Requirements
License	LGPL-2.1
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0

Package Downloads

Package Source	imageHTS_1.0.0.tar.gz
Windows Binary	imageHTS_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary
Package Downloads Report	Download Stats